Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq88566 104 2e-17 seq21876 104 2e-17 seq119770 95.1 1e-14 seq123102 93.3 4e-14 seq138766 91.5 2e-13 >seq88566 Length=1870 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 40688 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA 40747 |||||||||||||||| ||||| || ||||| ||||||||||| | || || ||| | Sbjct 458 AAATGCAAATATTCGTTAAAACCCTTACGGGTAAAACCATCACACTTGAGGTTGAACCTT 399 Query 40748 CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | || |||| | || |||| || || || || || || | || | Sbjct 398 CCGATACTATTGAACATGTCAAAGCCAAGATTCAAGATAAGGAAGGAATTCCACCAGATC 339 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||||||| | || | || |||||||||||||| |||| || || | || || | Sbjct 338 AGCAACGTTTAATTTTTGCTGGCAAACAGCTGGAAGACGGACGAACTTTGGGTGATTATA 279 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||| || ||||| | ||| ||||| |||| ||||| Sbjct 278 ACATTCAAAAGGAATCTACGTTGCATTTAGTATTGCG 242 >seq21876 Length=2391 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||||||||| | || ||||| || |||||| | || || || | | Sbjct 512 ATGCAAATCTTCGTAAAAACTTTGACTGGCAAGACTATCACCCTGGAAGTTGAGCCGTCT 571 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| | |||| || || | ||||| ||||| || ||| | || || Sbjct 572 GACACCATCGAAAACG-TTAAGGCTAAGATCCAGGACAAGGAGGGAATTCCCCCAGATCA 630 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| ||||| || |||| || | || ||| | ||| ||||| Sbjct 631 GCAGCGTTTAATCTTCGCCGGCAAGCAATTGGAAGATGGCCGTACCTTGTCCGATTACAA 690 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| |||||||| | ||||| ||| | || |||| Sbjct 691 CATTCAGAAGGAATCAACGCTTCATTTGGTCCTGCG 726 >seq119770 Length=1537 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| ||||| || || ||||| ||||||||| | || || | |||| Sbjct 1095 AAAATGCAAATTTTCGTCAAAACACTAACTGGCAAGACCATCACCTTAGAGGT-GGAGCC 1037 Query 40747 A-CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | | |||| | | ||| |||| | || |||| || ||||| || || || | || Sbjct 1036 ATCTGACACCATTGAAAATGTCAAAGCTAAGATTCAGGATAAAGAAGGTATTCCACCAGA 977 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 || ||||| || || | ||| || ||||| | || || | || || || |||||| Sbjct 976 TCAACAACGTCTTATTTTCGCCGGAAAACAATTAGAAGATGGACGTACTCTATCCGACTA 917 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| || || || || | || || || || || ||||| Sbjct 916 CAATATTCAAAAAGAATCAACACTTCACCTGGTATTGCG 878 >seq123102 Length=1410 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||||||||| || ||||| | || |||||||| ||||| | || || ||| | | Sbjct 816 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACTATCACATTGGAAGTTGAACCTTCG 757 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | || | |||||||| || || || ||||| ||| | ||||| Sbjct 756 GATACCATCGAGAACG-TTAAAGCAAAAATTCAAGATAAGGAAGGCATTCCCCCAGACCA 698 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| | || | ||| ||||| ||||| || || | ||||| | ||| ||||| Sbjct 697 ACAACGTTTAATTTTCGCCGGCAAGCAGCTTGAGGATGGACGCACATTATCCGATTACAA 638 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| || ||||| | || || || | || |||| || |||| || Sbjct 637 CATTCAAAAGGAATCAACACTTCACTTGGTTCTGCGTCTGCGGGGTGG 590 >seq138766 Length=1258 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 40688 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA 40747 |||||||||| ||||||||||| || ||||| ||||| || || | || || | ||||| Sbjct 638 AAATGCAAATCTTCGTAAAAACACTAACGGGAAAAACAATAACACTGGAGGT-GGAGCCA 696 Query 40748 -CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||| | || | | |||||| ||||| | || |||||||| || || | || Sbjct 697 TCCGAAAATGTTGAGAATGTCAAGGCCAAAATACAGGATAAAGAGGGGATTCCACCAGAT 756 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| |||| |||| || || || ||||| || || | | || || ||| ||| Sbjct 757 CAGCAGAGACTGATCTTTGCTGGTAAGCAGCTTGAGGATGGAAGAACACTTTCCGATTAC 816 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || || ||||| ||| | || | ||||| || Sbjct 817 AATATACAGAAAGAGTCTACAATCCATCTTGT 848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514323710388960