Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq119770 172 8e-38 seq123102 150 3e-31 seq88566 127 3e-24 seq101742 89.7 8e-13 >seq119770 Length=1537 Score = 172 bits (190), Expect = 8e-38 Identities = 178/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | || |||||||| ||||| || || || ||||| | || || Sbjct 1093 AATGCAAATTTTCGTCAAAACACTAACTGGCAAGACCATCACCTTAGAGGTGGAGCCATC 1034 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | ||| || ||||| |||||||||||||| ||||| ||||| Sbjct 1033 TGACACCATTGAAAATGTCAAAGCTAAGATTCAGGATAAAGAAGGTATTCCACCAGATCA 974 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | |||||||| || |||||||||||||| ||| | || || || || || || Sbjct 973 ACAACGTCTTATTTTCGCCGGAAAACAATTAGAAGATGGACGTACTCTATCCGACTACAA 914 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 |||||||||||||||||| | || |||| || ||| |||| |||||||||| Sbjct 913 TATTCAAAAAGAATCAACACTTCACCTGGTATTGCGTCTACGTGGTGGTATTA 861 >seq123102 Length=1410 Score = 150 bits (166), Expect = 3e-31 Identities = 183/246 (74%), Gaps = 4/246 (2%) Strand=Plus/Minus Query 124563 ACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAACAG 124622 || || ||||| || ||| | ||| |||| | |||||| ||| ||| | ||| Sbjct 1020 ACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCTGATACCATTGAAAATGTTAAAGCT 961 Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 |||||||||||||||||||| || ||||| ||||||||| | | ||||| || || ||| Sbjct 960 AAAATTCAAGATAAAGAAGGAATCCCACCAGATCAACAACGTTTGATTTTCGCTGGCAAA 901 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || ||||||||| | || ||||| |||||||||||||| || ||||| || |||||| Sbjct 900 CAGTTAGAGGATGGACGCACATTGTCCGATTATAATATTCAGAAGGAATCTACATTGCAT 841 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTCAT--AAAAATTGATTGTAAATAAA 124799 || || ||||| | || || ||||| ||| ||| | ||| ||||| || || || Sbjct 840 TTAGTATTACGCCTTCGTGGAGGTATGCAAATATTTGTTAAAACATTGACTGGCAA-AAC 782 Query 124800 TATCAC 124805 |||||| Sbjct 781 TATCAC 776 Score = 134 bits (148), Expect = 2e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | || ||| | || ||||||||||| || | || ||||| | Sbjct 816 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACTATCACATTGGAAGTTGAACCTTCG 757 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || || ||||| || |||||||||||||| ||||| || || || || || Sbjct 756 GATACCATCGAGAACGTTAAAGCA-AAAATTCAAGATAAGGAAGGCATTCCCCCAGACCA 698 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | ||||| || || || || | |||||| | || |||||| ||||| || Sbjct 697 ACAACGTTTAATTTTCGCCGGCAAGCAGCTTGAGGATGGACGCACATTATCCGATTACAA 638 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| |||||||| | || |||||| | ||| | || |||||||| Sbjct 637 CATTCAAAAGGAATCAACACTTCACTTGGTTCTGCGTCTGCGGGGTGGTAT 587 >seq88566 Length=1870 Score = 127 bits (140), Expect = 3e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||||||||| | || || || || || ||||| || || | ||| ||||| | Sbjct 457 AATGCAAATATTCGTTAAAACCCTTACGGGTAAAACCATCACACTTGAGGTTGAACCTTC 398 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| || | ||| || ||||||||||| ||||| || ||||| ||||| Sbjct 397 CGATACTATTGAACATGTCAAAGCCAAGATTCAAGATAAGGAAGGAATTCCACCAGATCA 338 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | |||||||| || ||||| | || || | ||||| || | |||||||| Sbjct 337 GCAACGTTTAATTTTTGCTGGCAAACAGCTGGAAGACGGACGAACTTTGGGTGATTATAA 278 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 |||||||| ||||| || |||||||| || || ||| | |||| || Sbjct 277 CATTCAAAAGGAATCTACGTTGCATTTAGTATTGCGTCTCAGAGGAGG 230 >seq101742 Length=1472 Score = 89.7 bits (98), Expect = 8e-13 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 205731 ATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTT 205790 |||||| || |||||||||||||||||||| || || || || |||||||| ||||||| Sbjct 436 ATATTTTGCTCCAAAATGACGCCATTGAAAGCCGTACACGGGCCCTAAATCGCCTTCTTC 495 Query 205791 TCTATCATTAAAACCACGtttttttatatattttaatga--tccattttcatcccaaata 205848 || ||| |||||||| ||| | || | | || | || | || | ||||| || Sbjct 496 TCGTTCACAAAAACCACATTTGTCTAAAAA--TTCACGACTGCTGTTACCGTCCCATATG 553 Query 205849 tggat-tcctttattttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAA 205907 || || | |||| | || || | || | | || ||| || |||||| | || Sbjct 554 TGAATATTCTTT-TCTTGAAGTAATTTAGCGTCCGTCTGGCCATGTACAAACCAAAGTAG 612 Query 205908 TTCTTCAACAATTCCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAA 205958 ||||||| ||| |||||||||| | |||||| || || || ||||| Sbjct 613 TTCTTCAGCAACAGCTCTCCAAAATACCCGTTTTGTGGTTAACAACGGAAA 663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754142960812800