Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_002166.1 Length=40751 Score E Sequences producing significant alignments: (Bits) Value seq139046 251 2e-62 >seq139046 Length=22897 Score = 251 bits (278), Expect = 2e-62 Identities = 546/811 (67%), Gaps = 16/811 (2%) Strand=Plus/Minus Query 4368 CACTGATCCAGCCTATGCAGATCC---CAGGCATCATCATGCCAGGCCTGCGCCGTCTTA 4424 ||||||| ||||| ||| | || | || || | ||||| || || |||| | | Sbjct 18556 CACTGATTCAGCC---GCAAACCCTGCCGGGTATTTTGATGCCGGGTCTTACCCGTTTGA 18500 Query 4425 CCATTCGTGATCTGCTGGCTCAGGGCCGCACTTCCAGTAACGCTCTGGAATATGTGCGTG 4484 || | || |||||||| ||||| || ||| |||| ||| | || || |||||| Sbjct 18499 CCGTCCGCGATCTGCTTTTGCAGGGTCGTACTACCAGCAACAGCATCGAGTACATGCGTG 18440 Query 4485 AAGAGGTGTTTACCAATAACGCCG-ACGTGGTGGCAGAGAAAGCACTGAAGCCAGAATCG 4543 || | || |||||||| || | || || || | || || | || ||||| || || Sbjct 18439 AAAACGTATTTACCAACTCGGCTGCACCTGTTGCC-GAAAATACGCTTAAGCCTGAGTCT 18381 Query 4544 GATATCACCTTCAGCAAACAAACCGCGAACGTGAAGACCATCGCGCACTGGGTGCAGGCA 4603 | ||||| || | | |||| |||||||| || |||||||||||| || || Sbjct 18380 AACATCACTTTTACCGCCGAAACTGCGAACGTTCGCACTATCGCGCACTGGCTGACCGCC 18321 Query 4604 TCACGTCAGGTGATGGATGATGCGCCAATGCTTCAGTCCTACATTAACAACCGCCTCATG 4663 || ||||| || ||| || | ||||| |||||||||| || || | ||| Sbjct 18320 TCTAAACAGGTTCTGTCTGACGCCGCTATGCTCGAGTCCTACATCAATGCTCGATTGATG 18261 Query 4664 TACGGCCTGGCACTGAAGGAAGAGGGCCAGCTGCTGAACGGCGACGGTACCGGGGATAAC 4723 ||||| || ||| |||||| ||||| ||||| ||||||||||| ||||| | || Sbjct 18260 TACGGTTTGCAGCTGGTGGAAGACGGCCAACTGCTCAACGGCGACGGCACCGGCCAAAAT 18201 Query 4724 CTGGAAGGGCTGAACAAAGTGGCAACCGCCTATGACACCTCGTTGAATGCCACCGGCGAC 4783 |||||||| |||||| || || || ||||| || ||| | | | | ||||| || Sbjct 18200 CTGGAAGGTTTGAACACCGTTGCGACAGCCTACGATACCGGGATTACGGTTACCGGTGAT 18141 Query 4784 ACCCGCGCTGACATTATCGCTCACGCTATTTATCAGGTGACCGAGTCTGAGTTCAGCGCT 4843 ||| |||||||||| | |||||||| || |||||||| | || || || |||| Sbjct 18140 ACCGCCGCTGACATTCTGGCTCACGCCATCTATCAGGTTGCGTTATCCGAATTTGACGCT 18081 Query 4844 TCCGGTATCGTCCTGAACCCGCGCGACTGGCACAACATCGCGTTGCTGAAAGACAATGAA 4903 || || || | ||||||||| |||||||| ||| |||||||| ||||| | | | Sbjct 18080 TCGGGCCTCATTCTGAACCCGTTAGACTGGCATCGCATTGCGTTGCTTAAAGATACTCAG 18021 Query 4904 GGCCGCTATATCTTCGGTGGTCCTCAGGCATTCACCAGTAACATCATGTGGGGCTTGCCA 4963 || || || | || || || |||| || | ||| | | ||||| ||||| Sbjct 18020 GGTAATTACATTCTGGGCGGCCCGCAGGTGTTTGCGTCTAAACTGCTCTGGGGTCTGCCA 17961 Query 4964 GTGGTTCCGACTAAGGCGCAGGCCGCCGGCACCTTTACCGTAGGCGGTTTCGATATGGCC 5023 || ||| | | | |||||| || || || || || || || |||||| |||| || Sbjct 17960 GTTGTTACTTCAACCCAGCAGGCGGCGGGTACGTTCACTGTTGGTGGTTTCAATATCGCT 17901 Query 5024 TCACAGGTCTGGGATCGCATGGATGCCACCGTGGAAGTTAGCCGTGAAGACCG----CGA 5079 || || || ||||| ||| || || | | || | || ||| || ||| Sbjct 17900 TCTCAAGTTTGGGACCGCGAAGACGCAAGTAT-CCAGCTCGCAACTCAGAACGGTACCGA 17842 Query 5080 TAACTTCGTGAAAAACATGCTGACCATCCTGTGCGAAGAGCGTCTGGCGCTGGCACATTA 5139 | || |||||||||||| ||||||| || || ||||| || || |||||||| || || Sbjct 17841 T---TTTGTGAAAAACATGGTGACCATTCTTTGTGAAGAACGCCTTGCGCTGGCGCACTA 17785 Query 5140 TCGCCCGACAGCAATCATCAAGGGCACCTTC 5170 ||||| || || || | || || |||||| Sbjct 17784 CCGCCCAACCGCCATTGTGAAAGGGACCTTC 17754 Score = 100 bits (110), Expect = 7e-17 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 8127 CTGGGAAAGACTTCGAGCTCAGCGCCGAAGACGAATTCTGGTGCGAGCTCGTCCTCAACG 8186 |||||||||| | ||| |||||||| |||||||||||| ||||| |||||||| || Sbjct 14612 CTGGGAAAGAGTACGAACTCAGCGCTGAAGACGAATTCCTCTGCGAACTCGTCCTTGCCG 14553 Query 8187 GAATCGGAGGCAGAACAATCGCCGAAGCGCGGGAAGTCCTCTC 8229 | ||||| |||| ||| |||||||| ||||||||| ||||| Sbjct 14552 GGATCGGGGGCAAAACGATCGCCGAGGCGCGGGAAACGCTCTC 14510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130066482767676