Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_002167.1 Length=39732 Score E Sequences producing significant alignments: (Bits) Value seq139046 255 1e-63 seq127644 105 2e-18 seq17393 80.6 7e-11 >seq139046 Length=22897 Score = 255 bits (282), Expect = 1e-63 Identities = 547/811 (67%), Gaps = 16/811 (2%) Strand=Plus/Minus Query 4368 CACTGATCCAGCCTATGCAGATCC---CAGGCATCATCATGCCAGGCCTGCGCCGTCTTA 4424 ||||||| ||||| ||| | || | || || | ||||| || || |||| | | Sbjct 18556 CACTGATTCAGCC---GCAAACCCTGCCGGGTATTTTGATGCCGGGTCTTACCCGTTTGA 18500 Query 4425 CCATTCGTGATCTGCTGGCTCAGGGCCGCACTTCCAGTAACGCTCTGGAATATGTGCGTG 4484 || | || |||||||| ||||| || ||| |||| ||| | || || |||||| Sbjct 18499 CCGTCCGCGATCTGCTTTTGCAGGGTCGTACTACCAGCAACAGCATCGAGTACATGCGTG 18440 Query 4485 AAGAGGTGTTTACCAATAACGCCG-ACGTGGTGGCAGAGAAAGCACTGAAGCCAGAATCG 4543 || | || |||||||| || | || || || | || || | || ||||| || || Sbjct 18439 AAAACGTATTTACCAACTCGGCTGCACCTGTTGCC-GAAAATACGCTTAAGCCTGAGTCT 18381 Query 4544 GATATCACCTTCAGCAAACAAACCGCGAACGTGAAGACCATCGCGCACTGGGTGCAGGCA 4603 | ||||| || | | |||| |||||||| || |||||||||||| || || Sbjct 18380 AACATCACTTTTACCGCCGAAACTGCGAACGTTCGCACTATCGCGCACTGGCTGACCGCC 18321 Query 4604 TCACGTCAGGTGATGGATGATGCGCCAATGCTTCAGTCCTACATTAACAACCGCCTCATG 4663 || ||||| || ||| || | ||||| |||||||||| || || | ||| Sbjct 18320 TCTAAACAGGTTCTGTCTGACGCCGCTATGCTCGAGTCCTACATCAATGCTCGATTGATG 18261 Query 4664 TACGGCCTGGCACTGAAGGAAGAGGGCCAGCTGCTGAACGGCGACGGTACCGGGGATAAC 4723 ||||| || ||| |||||| ||||| ||||| ||||||||||| ||||| | || Sbjct 18260 TACGGTTTGCAGCTGGTGGAAGACGGCCAACTGCTCAACGGCGACGGCACCGGCCAAAAT 18201 Query 4724 CTGGAAGGGCTGAACAAAGTGGCAACCGCCTATGACACCTCGCTGAATGCCACCGGCGAC 4783 |||||||| |||||| || || || ||||| || ||| | | | | ||||| || Sbjct 18200 CTGGAAGGTTTGAACACCGTTGCGACAGCCTACGATACCGGGATTACGGTTACCGGTGAT 18141 Query 4784 ACCCGCGCTGACATTATCGCTCACGCTATTTATCAGGTGACCGAGTCTGAGTTCAGCGCT 4843 ||| |||||||||| | |||||||| || |||||||| | || || || |||| Sbjct 18140 ACCGCCGCTGACATTCTGGCTCACGCCATCTATCAGGTTGCGTTATCCGAATTTGACGCT 18081 Query 4844 TCCGGTATCGTCCTGAACCCGCGCGACTGGCACAACATCGCGTTGCTGAAAGACAATGAA 4903 || || || | ||||||||| |||||||| ||| |||||||| ||||| | | | Sbjct 18080 TCGGGCCTCATTCTGAACCCGTTAGACTGGCATCGCATTGCGTTGCTTAAAGATACTCAG 18021 Query 4904 GGCCGCTATATCTTCGGTGGTCCTCAGGCATTCACCAGTAACATCATGTGGGGCTTGCCA 4963 || || || | || || || |||| || | ||| | | ||||| ||||| Sbjct 18020 GGTAATTACATTCTGGGCGGCCCGCAGGTGTTTGCGTCTAAACTGCTCTGGGGTCTGCCA 17961 Query 4964 GTGGTTCCGACTAAGGCGCAGGCCGCCGGCACCTTTACCGTAGGCGGTTTCGATATGGCC 5023 || ||| | | | |||||| || || || || || || || |||||| |||| || Sbjct 17960 GTTGTTACTTCAACCCAGCAGGCGGCGGGTACGTTCACTGTTGGTGGTTTCAATATCGCT 17901 Query 5024 TCACAGGTCTGGGATCGCATGGATGCCACCGTGGAAGTTAGCCGTGAAGACCG----CGA 5079 || || || ||||| ||| || || | | || | || ||| || ||| Sbjct 17900 TCTCAAGTTTGGGACCGCGAAGACGCAAGTAT-CCAGCTCGCAACTCAGAACGGTACCGA 17842 Query 5080 TAACTTCGTGAAAAACATGCTGACCATCCTGTGCGAAGAGCGTCTGGCGCTGGCGCATTA 5139 | || |||||||||||| ||||||| || || ||||| || || ||||||||||| || Sbjct 17841 T---TTTGTGAAAAACATGGTGACCATTCTTTGTGAAGAACGCCTTGCGCTGGCGCACTA 17785 Query 5140 TCGCCCGACAGCAATCATCAAGGGCACCTTC 5170 ||||| || || || | || || |||||| Sbjct 17784 CCGCCCAACCGCCATTGTGAAAGGGACCTTC 17754 >seq127644 Length=1267 Score = 105 bits (116), Expect = 2e-18 Identities = 173/246 (70%), Gaps = 10/246 (4%) Strand=Plus/Plus Query 6105 GGCGTCCATATTCGTGGCGTTAACCCGCGCACCGGAAACAGCGATAACACGATGAAGGCT 6164 ||||| || |||||||| ||||| || || || || || || ||||| |||||||| Sbjct 1024 GGCGTGCACATTCGTGGTACGAACCCACGGACAGGGAATAGTGACAACACCATGAAGGCA 1083 Query 6165 AATAACCCGAGAAAC---GCCTTTTACTGGCGATTCGTTGAGCTTGGTACCGCGAACATG 6221 || |||||| || | ||||||||| || ||||| | || || |||| ||| Sbjct 1084 TCGAAT---AGAAACAATGCTTATTACTGGCGCTTTGTTGAAATGGGCACGTCGAAAATG 1140 Query 6222 CCTGCACATCCGTTTGTGCGACCCGCTTACGATACTCGCGAGGAAGAGGC--CGCCAGCG 6279 | |||||||||||||| || || ||||| | || ||||| | ||| || ||||| Sbjct 1141 GCCGCACATCCGTTTGTCCGGCCTGCTTATTCTGCTAAGGAGGACGCGGCCACGGCAGCG 1200 Query 6280 TCGCCATTGCCAGGATGAATCAGGCTATTGATGAGGTATTGAGCAAGTGAATGAAGATAA 6339 || |||||| |||| | ||||||||| |||| | ||| ||||||| ||| | Sbjct 1201 --GCATTTGCCAAAGCGAATGAAGCTATTGATAAGGTTCTATCCAAATGAATGAGGATCA 1258 Query 6340 TATCTA 6345 ||||| Sbjct 1259 AATCTA 1264 >seq17393 Length=1625 Score = 80.6 bits (88), Expect = 7e-11 Identities = 79/102 (77%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 14341 AACACTGCAGCGCAAGGCTACCCGGTGCCTCTGCTTTATGGTAAGCGTCGAATCGGCGGA 14400 ||||||| ||||||||| | |||||||| | |||||||| || || || || || Sbjct 827 AACACTGTTGCGCAAGGCAATCCGGTGCCAATTCTTTATGGCCGCCGCCGCATTGGGGGG 886 Query 14401 GCGATTATTTCTGCCGGAATTTATGTCGAAGATCAACAATAA 14442 |||||||| || ||||||||||| | ||||| || |||||| Sbjct 887 GCGATTATCTCCGCCGGAATTTACGCTGAAGACCAGCAATAA 928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126811066906888