Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq88566 102 9e-17 seq78961 95.1 1e-14 seq54767 91.5 2e-13 seq32335 91.5 2e-13 seq138766 89.7 6e-13 seq45723 89.7 6e-13 seq123102 82.4 9e-11 >seq88566 Length=1870 Score = 102 bits (112), Expect = 9e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| | |||||| || |||||||| || ||||||||||| || |||||| || Sbjct 230 CCTCCTCTGAGACGCAATACTAAATGCAACGTAGATTCCTTTTGAATGTTATAATCACCC 289 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||| || |||| || ||||| || ||||| || || | || ||||| || | || Sbjct 290 AAAGTTCGTCCGTCTTCCAGCTGTTTGCCAGCAAAAATTAAACGTTGCTGATCTGGTGGA 349 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||| | | ||| | || | ||||| | | || ||| | ||| || Sbjct 350 ATTCCTTCCTTAT-CTTGAATCTTGGCTTTGACATGTTCAATAGTATCGGAAGGTTCAAC 408 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTT 43185 || | ||||||||||| ||||| || || || || || |||||||||| Sbjct 409 CTCAAGTGTGATGGTTTTACCCGTAAGGGTTTTAACGAATATTTGCATTT 458 >seq78961 Length=1067 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 371 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 430 Query 60126 TACTACCGAGGATTG 60140 ||||| ||||||||| Sbjct 431 TACTATCGAGGATTG 445 >seq54767 Length=1803 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1452 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 1511 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 1512 ATACTATCGAGGA 1524 >seq32335 Length=1939 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||| Sbjct 631 TTACTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCA 690 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 691 CTATACTATCGAGGA 705 >seq138766 Length=1258 Score = 89.7 bits (98), Expect = 6e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || ||||||||||| | || || | | || || |||||||||||||| || Sbjct 831 CTCTTTCTGTATATTGTAATCGGAAAGTGTTCTTCCATCCTCAAGCTGCTTACCAGCAAA 772 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || |||| |||||| || | || | | ||| || ||| ||||| |||| | Sbjct 771 GATCAGTCTCTGCTGATCTGGTGGAATCCCCTCTTTATCCTGTATTTTGGCCTTGACATT 712 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | || | ||| | ||||| || | || || ||||| |||||||| || ||||| Sbjct 711 CTCAACATTTTCGGATGGCTCCACCTCCAGTGTTATTGTTTTTCCCGTTAGTGTTTTTAC 652 Query 43172 AAAGATTTGCATTT 43185 ||||||||||||| Sbjct 651 GAAGATTTGCATTT 638 >seq45723 Length=2157 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 984 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 1043 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1044 TACTATCGAGGA 1055 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1474 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 1533 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1534 TACTATCGAGGA 1545 >seq123102 Length=1410 Score = 82.4 bits (90), Expect = 9e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||||| || | ||| ||||||||||| |||||||| | | || || | Sbjct 601 ACGCAGAACCAAGTGAAGTGTTGATTCCTTTTGAATGTTGTAATCGGATAATGTGCGTCC 660 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || ||||| || | || || ||||| | || | || ||||| Sbjct 661 ATCCTCAAGCTGCTTGCCGGCGAAAATTAAACGTTGTTGGTCTGGGGGAATGCCTTCCTT 720 Query 43088 GTCCATGATTTTTTGTTTGAGCG-TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 | | ||| |||||| || | || || | | || || | ||| || || | |||| Sbjct 721 AT-CTTGAATTTTTGCTTTAACGTTCTCGATGGTATCCGAAGGTTCAACTTCCAATGTGA 779 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | |||||||| || | || || ||||| |||||||| Sbjct 780 TAGTTTTGCCAGTCAATGTTTTAACAAATATTTGCAT 816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570823738124880