Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq88566 123 4e-23 seq123102 107 3e-18 seq119770 86.0 9e-12 >seq88566 Length=1870 Score = 123 bits (136), Expect = 4e-23 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 || ||||| || | ||||| ||||| || |||||||| ||| || || |||||||| Sbjct 230 CCTCCTCTGAGACGCAATACTAAATGCAACGTAGATTCCTTTTGA-ATGTTATAATCACC 288 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||||| | || || | ||||| ||||||||||| || | ||||||||| || || Sbjct 289 CAAAGTTCGTCCGTCTTCCAGCTGTTTGCCAGCAAAAATTAAACGTTGCTGATCTGGTGG 348 Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229 ||||||||| |||||||| |||||| ||| ||| || Sbjct 349 AATTCCTTCCTTATCTTGAATCTTGGCTTTGACATGTTCAATAGTATCGGAAGGTTCAAC 408 Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTT 146279 || |||||||| |||||||| || | ||||||| |||||||||||||| Sbjct 409 CTCAAGTGTGATGGTTTTACCCGTAAGGGTTTTAACGAATATTTGCATTT 458 >seq123102 Length=1410 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | ||| | |||||| ||||| || |||||||| || ||||||||||| || Sbjct 818 CCTCCACGAAGGCGTAATACTAAATGCAATGTAGATTCCTTCTGAATATTATAATCGGAC 877 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| ||||| ||||| ||||| |||||||| | ||| ||||| || || Sbjct 878 AATGTGCGTCCATCCTCTAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGG 937 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||||||||| Sbjct 938 ATTCCTTCTTTATCTTG 954 >seq119770 Length=1537 Score = 86.0 bits (94), Expect = 9e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 ||||||| || | || |||||||| ||||| || || || ||||| | | ||| Sbjct 881 AATACCAGGTGAAGTGTTGATTCTTTTTGAATATTGTAGTCGGATAGAGTACGTCCATCT 940 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 |||||||||||||| || ||||| | | ||| ||||| || ||||| ||||||||||| Sbjct 941 TCTAATTGTTTTCCGGCGAAAATAAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCC 1000 Query 146186 TG 146187 || Sbjct 1001 TG 1002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742234095352320