Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_002730.1 Length=38297 Score E Sequences producing significant alignments: (Bits) Value seq43481 167 6e-37 seq104767 154 4e-33 >seq43481 Length=83004 Score = 167 bits (184), Expect = 6e-37 Identities = 263/377 (70%), Gaps = 0/377 (0%) Strand=Plus/Plus Query 8415 TTTGTCTCAATTGCAACGCCTATAATCTTGCAGTTTCCATTGATTGGCACGAGAGGCCAT 8474 || ||||| | || ||||| || || ||| || |||||||| || || | ||||| Sbjct 67775 TTAGTCTCGACGGCGACGCCAATGATGCGGCAATTGCCATTGATCGGAACCATCGGCCAG 67834 Query 8475 GCAGGATTAAGTCCCTTGAGGTATTTATTTCCGCCGTCGATTATCAGCTTCTTGAATGTT 8534 || ||||| | ||||| |||||||| | ||||| || | | ||||||||| || Sbjct 67835 GCGGGATTTAACCCCTTAAGGTATTTCTGGTTACCGTCTATCACTAACTTCTTGAACGTC 67894 Query 8535 GCTTCGTTAGAGTCAGAAAGTTTTGCTATGACCAAGCTGCCGTTGATCGCCTCCCTTCCG 8594 |||||||| | || | ||||| || || || | |||||||| | ||||| | ||| Sbjct 67895 GCTTCGTTGGCATCGGTCAGTTTGGCGATCACTAGTTTGCCGTTGGTGGCCTCTTTGCCG 67954 Query 8595 GTATCGAAAAGAACGAATGTTCCCTCTGGAATGCTTAACCCAACCGGTGCCGTCATTGAA 8654 || || || || || || || || || |||||||| | ||| | || || ||||| || Sbjct 67955 GTGTCAAACAGGACAAAGGTCCCTTCAGGAATGCTGAGCCCCATGGGGGCGGTCATCGAG 68014 Query 8655 TCACCTTCCACTTTAAGCCAGAACGCATTACCTTGAATATGCGCGTCAGACTCAAGCCAA 8714 ||||| || || | ||| || | | || |||||||||||||||||||||||||| Sbjct 68015 TCACCGTCAACCAGTAACCAAAATCCCTCGCCCTGAATATGCGCGTCAGACTCAAGCCAG 68074 Query 8715 ACATCTATGTCTTTAATGGTGTATGGTTCGCATGCTTCACACCACGAGCCAGCCTGGATA 8774 || || ||||| | | | || | || ||||| ||| | || ||||||| Sbjct 68075 TGGTCGATATCTTTTAGGCTATAAGCCTCAATGGCTTCGTTCCAGGCACCGGCCTGGACC 68134 Query 8775 CTGCTTAACACCGGATA 8791 |||||| ||||||||| Sbjct 68135 TTGCTTATCACCGGATA 68151 >seq104767 Length=4578 Score = 154 bits (170), Expect = 4e-33 Identities = 119/135 (88%), Gaps = 6/135 (4%) Strand=Plus/Minus Query 18001 GCGCATCTCACGCGCATATTAACGAGAGCCTTTCAGTAAGC-GAGCCTGAGAAATGCCGT 18059 |||| || || |||||| | | |||||| ||||||| |||| ||||||||||| ||||| Sbjct 4565 GCGCGTCGCA-GCGCATTTCATCGAGAGTCTTTCAGAAAGCTGAGCCTGAGAACAGCCGT 4507 Query 18060 TATAGGTGGCGACCTCTCTCGGGCGGCTTTTCTGTGAGA-CAGGCTCAC-TTTCTAAAAG 18117 |||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||| Sbjct 4506 TATAGGTGGCGACCTCTCTCGGGCGGCTTTTCTGTGCGACCAGGCTCACTTTTCTAAAAG 4447 Query 18118 GTAAAGACGCTATGA 18132 |||| ||||||||| Sbjct 4446 GTAA--ACGCTATGA 4434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122226649085268