Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq119770 134 1e-26 seq123102 111 1e-19 seq21876 98.7 8e-16 seq88566 84.2 2e-11 >seq119770 Length=1537 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || ||||| | | ||||| |||||||||||||||||||||||| |||||||||| Sbjct 866 CCACCACGTAGACGCAATACCAGGTGAAGTGTTGATTCTTTTTGAATATTGTAGTCGGAT 925 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||| |||||||| || || | ||||| | ||||||||| || Sbjct 926 AGAGTACGTCCATCTTCTAATTGTTTTCCGGCGAAAATAAGACGTTGTTGATCTGGTGGA 985 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| ||||| ||| | | || ||||| | | ||| |||||| ||||| Sbjct 986 ATACCTTCTTTATCCTGAATCT-TAGCTTTGACATTTTCAATGGTGTCAGATGGCTCCAC 1044 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 || | ||||||| | ||||| || | |||||| || |||||||||||||| Sbjct 1045 CTCTAAGGTGATGGTCTTGCCAGTTAGTGTTTTGACGAAAATTTGCATTTT 1095 >seq123102 Length=1410 Score = 111 bits (122), Expect = 1e-19 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || ||||| || | || |||| ||||||||||||||| |||||||||||||| |||| Sbjct 590 CCACCCCGCAGACGCAGAACCAAGTGAAGTGTTGATTCCTTTTGAATGTTGTAATCGGAT 649 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | ||| || | || ||||| || | || | | |||||| || ||| Sbjct 650 AATGTGCGTCCATCCTCAAGCTGCTTGCCGGCGAAAATTAAACGTTGTTGGTCTGGGGGA 709 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCG--GGCTCGG 18276 | |||||||||||| ||||| |||||| | | || | | || ||| || || Sbjct 710 ATGCCTTCCTTATCTTGAATTT-TTGCTTTAAC-GTTCTCGATGGTATCCGAAGGTTCAA 767 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | ||||| ||||||| ||||||||||| ||||| |||||||| Sbjct 768 CTTCCAATGTGATAGTTTTGCCAGTCAATGTTTTAACAAATATTTGCAT 816 >seq21876 Length=2391 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || ||||| | || |||| ||||| |||||||| || ||||||||||| |||| | Sbjct 738 CCACCACGTAGACGCAGGACCAAATGAAGCGTTGATTCCTTCTGAATGTTGTAATCGGAC 679 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||||||| ||||| || |||| | | || ||||| ||| Sbjct 678 AAGGTACGGCCATCTTCCAATTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGGGGA 619 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || ||||| || || | ||| || | | | | |||||| ||||| | Sbjct 618 ATTCCCTCCTTGTCCTGGATCTTAGCCTTAACGTTTTCGATGGTGTCAGACGGCTCAACT 559 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| | ||||| ||||| |||||||| || |||||||| Sbjct 558 TCCAGGGTGATAGTCTTGCCAGTCAAAGTTTTTACGAAGATTTGCAT 512 >seq88566 Length=1870 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || ||||| ||||||||||| || || ||| ||| | ||||||| |||||||| Sbjct 260 GTAGATTCCTTTTGAATGTTATAATCACCCAAAGTTCGTCCGTCTTCCAGCTGTTTGCCA 319 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TT 18247 ||| | || | | ||| ||||| || | ||||||||||| ||| | | || || Sbjct 320 GCAAAAATTAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATCTTGAATCT-TGGCTTT 378 Query 18248 GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGT 18307 ||| ||| ||| ||| || || || |||| |||||| |||| || || | || Sbjct 379 GACATGTTCAATAGTATCGGAAGGTTCAACCTCAAGTGTGATGGTTTTACCCGTAAGGGT 438 Query 18308 TTTTACAAAAATTTGCATTTTTAAACTCTTATAAA 18342 ||| || || |||||||||| | ||| || |||| Sbjct 439 TTTAACGAATATTTGCATTTCTGAACAATTCTAAA 473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378701154885270