Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq43985 197 1e-45 seq88566 125 6e-24 seq123102 114 1e-20 seq119770 109 5e-19 seq21876 102 7e-17 >seq43985 Length=4878 Score = 197 bits (218), Expect = 1e-45 Identities = 846/1335 (63%), Gaps = 75/1335 (6%) Strand=Plus/Minus Query 22190 TAAAAATGTATCGACGTCAATTTTCCATAACTCGG--CAAGTCCATGTACACATTGAACG 22247 ||||||||||| || || | || |||||| | || || | |||| | | || |||| Sbjct 2681 TAAAAATGTATAGATGTAAGCTTGCCATAATTTGGTTCAGCTACATGAATA--TTAAACG 2624 Query 22248 ACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCG 22307 | ||||| |||||||| || || || |||||||| ||||| || || || || || Sbjct 2623 ATTGACTTTGATCGATGAATGCGCCACGATCGGCTGCCATCTTCATTGTAGTCTTCACCG 2564 Query 22308 ACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCT 22367 | || ||||| || || ||||| |||| | || | | ||||| ||||| || | | Sbjct 2563 ATATCTCCCAAACTGTTTTGTAAAGTTCACGTATTTTTGTTGGTATGGATTCAATACCTT 2504 Query 22368 GGACGGACCCGTTA-TTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATG 22426 | | || || |||| ||| || | ||| || || | ||||||||| | Sbjct 2503 GTATTGAACCACGGCTTGT-TATAATTTTAGATTTCATATCTTCATCCCACAAACCCAAT 2445 Query 22427 GCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGG 22486 | || | ||| | || |||| | || || |||||||| || || || | ||||| Sbjct 2444 TCAGTGAGATCGCGTAACAAATGATGATTAACAACTTGAAATTCACCCGAAAGTACGCGT 2385 Query 22487 CGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCG 22546 || | ||||| || || ||| | ||||| || |||||||| || |||| || || || Sbjct 2384 CGATTATAAATATTTGAAGTGTAGGGTTCAAACGATTCATTATTGCCCATAATTTGTGCA 2325 Query 22547 GTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGT---GCTTTG-- 22601 || || || || ||||| || || || |||| ||||| | | ||| | | ||| Sbjct 2324 GTTGATGCAGTGGGCATAGGGGCTAAAAGTAAAGAGTTGCGTACGCCATATTGTTTTATT 2265 Query 22602 --------------AAA--------------------TTTTA----CTCTTG-AGCATCG 22622 ||| ||||| ||||| | | | Sbjct 2264 TTCTNNNNNNAAGTAAAGAGTTGCGTACGCCATGTTGTTTTATTTTCTCTTTCAATACAG 2205 Query 22623 ACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGC 22682 |||| ||||| || || | || | || ||||||||||| ||||| | | || Sbjct 2204 ACCAATCCCAGAGGTCAGTTGGTTTT---TTATCCCACATATCATATTGAAGTATTCCTT 2148 Query 22683 GACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGC 22742 || | || |||||| || ||||| || | ||||||| | | || | ||| |||| Sbjct 2147 TGCTGACTGGTGAGCCTTCATAAGTTTCATAAGTACCATATTTTTCAGCCAATTCACAGC 2088 Query 22743 TCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGG 22802 | || || || ||||| || || ||||| || || |||| | || || || || Sbjct 2087 TAGCTTCTAATGCGCCATAGTACATAGTTTCAAAAATTTGTTGATTTAAGAGCGCAGCCT 2028 Query 22803 CGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTA 22862 |||| ||||| || |||||| | | || ||||| || | ||| || | ||| | Sbjct 2027 GCTCGCTCTCGTATGGGTAACGCATAAGGATTAAAGCGTCTGCAAAACCTTGTATGCCAA 1968 Query 22863 TACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCG 22922 | || || || || | | | | ||| ||| |||||||||||||| ||||| ||| Sbjct 1967 TGCCAATAGGGCGATGTCTGAAATTAGACTTCTTTGCCTCGGGCAATGGATAATGATTTA 1908 Query 22923 AATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAA 22982 ||||| || | || | || | || ||| | | || | | || Sbjct 1907 TGTCGATGATTTTATTTAGATTACGTGTTACAGTCATTGTAACCTCCTTCAAACGCTTAA 1848 Query 22983 AGTCGTAAACGCCCGATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATA 23042 | ||||| | || ||||||| | |||| || ||||| || | ||| || | Sbjct 1847 AATCGTACGTTTTTTCTGGTGTAACAAACATATTGAGTGCAATCGATGCTAAATTACAAA 1788 Query 23043 CGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTA 23102 | ||||| || ||| | | ||||| || ||||| ||||||| ||| ||||| || | Sbjct 1787 CAGCCACTTCATCTGGTGCTGAATACTCAACTATTTCTGTACATAAATTACTACATTTAA 1728 Query 23103 TCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACG 23162 | ||||| | ||| || || || |||| ||| || | ||||||||| ||||| || | Sbjct 1727 TAGTGCCAATATTTTGTTGATTACTCTTTCTATTACATGCATCCTTGTACAGCATATATG 1668 Query 23163 GCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAAC-- 23220 | ||||| ||||| || ||||| || || || || ||| | | | || || | || Sbjct 1667 GTGTGCCTGTCTCTACTTGCGATTCAATAATGGCAAACCAAAGACTTTGTGCTTTTACTT 1608 Query 23221 ---ACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTC--G 23275 | || ||| || |||| ||| || || || || |||||||| Sbjct 1607 TCTTATTAGCGCGT-----CCGTCTTGCTCATATTTAGTATATAATTTTTCAAATTCATC 1553 Query 23276 GCACCGTAACAGTCGGCCAGGCCGGG-CGATTGCATCGGACACATGAGACTCCACATTGA 23334 || || || | || || |||||| | ||| | |||||||| || ||| || Sbjct 1552 GCCCCATACC--TCATGCAAGCCGGGACACTTGTGT-GGACACATAAGCGACCA-AT--C 1499 Query 23335 GTCATT---TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTC 23391 ||||| |||||| ||| ||||||||||||| || ||||||| || || || | || Sbjct 1498 TTCATTAGCTTCAACACGTTTCATAAAAAGATCTGGAATCCATAATGCATAAAATAAATC 1439 Query 23392 GCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTC 23451 | || | ||| ||| |||| || || || || ||||||||||| || || | || Sbjct 1438 TCTAGCTCTATGCTCTTCTGTGCCAGTATTTTTCTTTAAATCCAAAAATTCAAATATATC 1379 Query 23452 CGCATGCCACGGCTC 23466 |||||||| || || Sbjct 1378 TGCATGCCATGGTTC 1364 Score = 120 bits (132), Expect = 3e-22 Identities = 177/251 (71%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 23741 GTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTG 23800 ||||| || | ||| ||||| || || || ||||| || | | || | | |||| Sbjct 1060 GTAGCTGCAGCGAAAAGTGTTGGTGACGCATGTGTAAAATAACGTTCTGAGAGCAAATTG 1001 Query 23801 TACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATC 23860 || || || || | |||||||| ||||||||||||||||| |||| |||||||| | | Sbjct 1000 TATGTTTCAATAACAGCATCAATATCCTCTCCGTGTATACCAATGGATACGCGCATTAAC 941 Query 23861 ATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATC 23920 || | || || | ||| || | || || | ||| | | ||| ||||||| || | Sbjct 940 ATATGCTGTGGACGCTCAACAATTTTACCATTCAGTTTAAGTAAATAAGAACGTTCCAGC 881 Query 23921 GTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAAA 23980 |||||||| |||||||| | ||| ||| |||||||| | | ||| || ||||| || Sbjct 880 GTTTTAAAACCAAAATAATTATAACCAAAATCACGATCATAGATTATAGCTGAATTTAAG 821 Query 23981 CGGTACGCATT 23991 || | ||||| Sbjct 820 CGATCAGCATT 810 >seq88566 Length=1870 Score = 125 bits (138), Expect = 6e-24 Identities = 163/224 (73%), Gaps = 1/224 (0%) Strand=Plus/Minus Query 31179 GAATTGAATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCG 31238 |||||| ||| | |||||||| ||||| || || || || || ||||| ||||| | | Sbjct 469 GAATTGT-TCAGAAATGCAAATATTCGTTAAAACCCTTACGGGTAAAACCATCACACTTG 411 Query 31239 ACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCG 31298 | |||||||| ||||| | | | ||| |||||| | || || |||||||| Sbjct 410 AGGTTGAACCTTCCGATACTATTGAACATGTCAAAGCCAAGATTCAAGATAAGGAAGGAA 351 Query 31299 TGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTA 31358 | || || || ||||| ||| |||| || |||||||||||| |||||||| ||| Sbjct 350 TTCCACCAGATCAGCAACGTTTAATTTTTGCTGGCAAACAGCTGGAAGACGGACGAACTT 291 Query 31359 TGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTA 31402 || | ||||||||||||||||| ||||| || | ||| | ||| Sbjct 290 TGGGTGATTATAACATTCAAAAGGAATCTACGTTGCATTTAGTA 247 >seq123102 Length=1410 Score = 114 bits (126), Expect = 1e-20 Identities = 167/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || || || |||| |||||||| ||||| | || |||||||| || Sbjct 816 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACTATCACATTGGAAGTTGAACCTTCG 757 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||| |||| | || || | ||| || ||||||||| | || || ||||| Sbjct 756 GATACCATCGAGAACGTTAAAGCAAA-AATTCAAGATAAGGAAGGCATTCCCCCAGACCA 698 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATA 31370 || ||| |||| ||||| ||||| ||| | || || | | | || | | ||||| | Sbjct 697 ACAACGTTTAATTTTCGCCGGCAAGCAGCTTGAGGA-TGGACGCACATTATCCGATTACA 639 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||||| ||||| || ||||| |||| || | ||| |||| |||| Sbjct 638 ACATTCAAAAGGAATCAACACTTCACTTGGTTCTGCGTCTGCGGGGTGGTA 588 >seq119770 Length=1537 Score = 109 bits (120), Expect = 5e-19 Identities = 158/219 (72%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 31185 AATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTG 31244 || |||| |||||||||||||| || || || || ||||| || |||||| | || || | Sbjct 1099 AACCAAA-ATGCAAATTTTCGTCAAAACACTAACTGGCAAGACCATCACCTTAGAGGTGG 1041 Query 31245 AACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGC 31304 | || || |||| | |||| |||||| | || ||| || ||||| | || | Sbjct 1040 AGCCATCTGACACCATTGAAAATGTCAAAGCTAAGATTCAGGATAAAGAAGGTATTCCAC 981 Query 31305 CCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGC 31363 | || || || ||||| || ||||| || ||||| || ||||| | | | ||| | | Sbjct 980 CAGATCAACAACGTCTTATTTTCGCCGGAAAACAATTAGAAGA-TGGACGTACTCTATCC 922 Query 31364 GATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTA 31402 || || || |||||||||||||| || ||||| |||||| Sbjct 921 GACTACAATATTCAAAAAGAATCAACACTTCACCTGGTA 883 >seq21876 Length=2391 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| |||||||| ||| ||||||| ||||| ||||| | || || || || ||| Sbjct 740 ATGCAAATCTTCGTAAAAACTTTGACAGGGAAAACTATCACTTTAGAAGTCGAGCCATCC 799 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | |||||| | || |||||||||||| | || || || || Sbjct 800 GACACTATTGAGAACGTCAAAGCTAAGATTCAGGACAAGGAAGGTATTCCTCCAGATCAA 859 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 || ||| |||| ||||||||||| || |||| ||| Sbjct 860 CAACGTTTAATCTTCGCTGGCAAGCAACTGGAGGAC 895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444991624564320