Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq101742 105 1e-17 >seq101742 Length=1472 Score = 105 bits (116), Expect = 1e-17 Identities = 203/297 (68%), Gaps = 2/297 (1%) Strand=Plus/Minus Query 35522 AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATG 35581 |||||| ||||| || | || || ||| | ||||||||||| | ||| | | | ||| Sbjct 317 AATCCAAATGATCGACGCATTATAATGTCTGCATGGAATCCGGTTGATATACCACAAATG 258 Query 35582 GCTCTTCCTCCATGCCACATGACTG-CTCAATTTTATGTGGCTAATGGAGAATTGTCGTG 35640 || | || || || || || ||| | ||||||| || ||||| ||||| | || || Sbjct 257 GCATTACCACCGTGTCAT-TGTCTGGCGCAATTTTTCGTTGCTAACGGAGAGCTATCTTG 199 Query 35641 CCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATA 35700 || ||||| || || || | |||| | || ||||| ||||| ||||||||||| || || Sbjct 198 TCAATTGTACCAACGTAGTGCAGATATGGGATTGGGTGTGCCATTCAATATTGCTTCCTA 139 Query 35701 CTCTCTTCTGACTCATCTGATGGCCAGTATGGTGGGTCTAAAACCGGGAGAGTTTATCCT 35760 | | || || ||| | |||| || ||| || || || ||||| ||| | | Sbjct 138 CGCCCTGCTCACTTACATGATCGCACATATAACTGGACTTTGTCCTGGAGACTTTGTTCA 79 Query 35761 CACTCTTGGTGACGCACACATTTATAATACCCACATTGAGGTGTTAAAGAAGCAGTT 35817 ||| | ||||| | || | ||||| | |||||||| || ||| | ||||| Sbjct 78 CACCTTAGGTGATACTCATGTCTATAAAAGTCACATTGAACCATTGAAGGAACAGTT 22 Score = 91.5 bits (100), Expect = 3e-13 Identities = 191/279 (68%), Gaps = 13/279 (5%) Strand=Plus/Minus Query 35176 ATCCATTTTTGGACCCCAAATGAGGTTCTCTCTTCGAGACGACACTATTCCAGTTCTCAC 35235 ||| ||||||||| | |||||||| ||| ||| |||| | |||| ||| | | Sbjct 706 ATCAATTTTTGGAGCACAAATGAGATTCGACCTTAGAGATAGCT---TTCC-GTTGTTA- 652 Query 35236 TACCAAGAAAA---TTTTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGG 35292 |||| ||| | || ||||||| |||| |||||||| ||||| | || Sbjct 651 -ACCACAAAACGGGTATTTTGGAGAGCTGTTGCTGAAGAACTACTTTGGTTTGTACATGG 593 Query 35293 CAATACAGACGCCAAAGAATTGGCCAAGAA--GAAGATACACATCTGGAACGCTAATGGG 35350 | | || ||||| ||| | | |||||| ||| || ||||| ||| ||| ||| | Sbjct 592 CCAGACGGACGCTAAATTACTT--CAAGAAAAGAATATTCACATATGGGACGGTAACAGC 535 Query 35351 TCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCC 35410 || |||||||| |||| | || || | || ||| ||| || ||||| || ||| Sbjct 534 AGTCGTGAATTTTTAGACAAATGTGGTTTTTGTGAACGAGAAGAAGGCGATTTAGGGCCC 475 Query 35411 GTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATAT 35449 || ||||| || ||||||||||||||||| || ||||| Sbjct 474 GTGTACGGCTTTCAATGGCGTCATTTTGGAGCAAAATAT 436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 987821029508930