Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq139046 361 2e-95 >seq139046 Length=22897 Score = 361 bits (400), Expect = 2e-95 Identities = 975/1471 (66%), Gaps = 44/1471 (3%) Strand=Plus/Minus Query 738 GCTGCCACACACGAAGGGCGAGTGGGCGTTCAAGGGGCAACTGGTAACGCTGGAGCCTTG 797 ||| || ||||| || || || ||||| |||||| | | | ||| || || || Sbjct 22411 GCTCCCTCACACAAAAGGTGAATGGGCTGCGAAGGGGATGAAGATCAAGCTCGAACCGTG 22352 Query 798 GCAGAAGTTCGGCTTGATGGCGACCTTCGGATGGCTCAACAAGCGCACCGGCAAGCGCCG 857 |||| ||||| ||| | || | ||| ||| | ||| | | ||| | || || Sbjct 22351 GCAGTCTTTCGGTTTGGGGATGATTTACGGGTGGTTGCGCAAAGGGTCAGGCTATCGTCG 22292 Query 858 GTTTCGAGAAAGCTACTGGGAGGTCCCCAGAAAGAACGGCAAATCGGTGACCGCCGCGGG 917 ||||| || || | || || ||| | || ||||| || || || ||||| || Sbjct 22291 TTTTCGTGAGGCGTATTTCGAAGTTCCCCGTAAAAACGGTAAGTCTGTTCTGGCCGCCGG 22232 Query 918 CGTCGGCATCGGCATGTTCGTCCTCGACGACGAGTTCGGTGCGGAGGTATATGCGGGCGC 977 | ||| | | ||||||||| ||| ||||||||| || || ||||| | ||||| Sbjct 22231 GATAGGCGTTGCGATGTTCGTCGCCGATCGCGAGTTCGGCGCCGAAGTATACTCAGGCGC 22172 Query 978 GACGACCGAAAAGCAGGCGTGGGAGGTTTTCCGTCCAGCGCAGT-TGATGGTCAAGCGCT 1036 ||||| | || |||||| |||||||||||| || || ||| | ||| | || Sbjct 22171 AACGACACAGAAACAGGCGATGGAGGTTTTCCGCCCGGC-CAGAATCATGATACAGAAAA 22113 Query 1037 CGCCCATG-CTGATCGATTCGGCTGGAATTGAGGTGAATGCCTCGAATATGAACAAGCCG 1095 ||||| ||| | | || || ||| ||||||||||| | | || | || Sbjct 22112 -GCCCAGAACTGCAACAAGCCGCAGGTATTCAGGTGAATGCCCAAACTTTGGCCGTCCCC 22054 Query 1096 GCCGACGGCAGCCGATTTGAGCCGATCATCGGCAACCCAGGCGACGGCGCGTCGCCGTCG 1155 | | | ||| ||| ||||| ||| || | ||| | || || || || || || || Sbjct 22053 GGCAATGGCTCCCGGTTTGAACCGGTCGTAGGCGATCCCGGAGATGGTGCAAGCCCCTCC 21994 Query 1156 TGTGCGATCGTGGACGAGTATCACGAGCACGACAGCGCCGCGCTGTACGAAACAATGCTG 1215 || ||||| | || || | |||||| ||| | | | | || ||||| || || ||||| Sbjct 21993 TGCGCGATTATCGATGAATTTCACGAACACCAGACCTCAGCACTGTATGACACTATGCTC 21934 Query 1216 ACTGGCATGGGCGCGCGTCGACAGCCGCTCATGTTCATCATCACGACTGC-GGGCGCGAA 1274 || || |||||||| || || |||||| | | |||||||||||||| || ||| | Sbjct 21933 ACCGGTATGGGCGCCCGCCGGCAGCCGTTACTATTCATCATCACGACGGCAGGGTACCTG 21874 Query 1275 CATCGAGGGGCCGTGCTTCGACAAGCGCCGGCAGGTGATCGAAATGCTCGAAGGGACGGT 1334 | | || || ||||||| | |||||| | | ||||||||||| ||| || Sbjct 21873 CTT-GACGGCCCGTGCTACACCAAGCGTAAAGAATGCCTAGAAATGCTCGACCAGACTGT 21815 Query 1335 GCCAGACGACGAGCTTTTCGGCTGGATCTGGACGATCGACGAAGGGGACGATTGGACCGA 1394 |||||| || |||||||| | || || ||| | || || | ||| |||||||| || Sbjct 21814 GCCAGATGAGGAGCTTTTTGCCTATATTTGGGACTTGGATGAGGAGGATGATTGGACAGA 21755 Query 1395 TCCGCGCGTGCT-GGCGAAAGCCAATCCGAATATCGGAATCTCGGTCTATCAGGACTATC 1453 |||| ||| | ||| ||||| || |||||| |||| | || || | | || | || Sbjct 21754 TCCG-GCGAATTTGGCTAAAGCAAACCCGAATCTCGGCGTGTCCGTATTCCGAGATTTTC 21696 Query 1454 TGGAAAGCCAGCA-GC--AGCGTGCGATTAAGTCTGCGC-GCTTCACGAACACGTTCAAG 1509 | || ||||||| || || || ||| || || | ||| | |||||||| Sbjct 21695 TTGAGAGCCAGCTCGCTAAGGCTG----TAAATCAGCCAAGATTCGCCGGAACGTTCAAA 21640 Query 1510 ACGAAGCACTTGAACGTCTGGACGTCGGCCAAGGCGGGCTATTTCAACCTCGAAGACTGG 1569 || ||||| |||||| ||||| | | || || |||| ||||||| | | ||||| Sbjct 21639 ACAAAGCATTTGAACCAGTGGACCGCCTCAAAAGCAGGCTTTTTCAACATGGTTAACTGG 21580 Query 1570 AAATCATGCGAAGACCGATCGCTGACCCTTGAGCAGTTCGAGGGGCAAGA--TTGCGTGC 1627 || |||||||| | ||||||| | || || ||| | || | || || | Sbjct 21579 AATAAGTGCGAAGATAAAACGCTGACGTTAGACCAATTCTACGGCAACGAAGTTAATT-- 21522 Query 1628 TCGCGCTCGACATGGCGCGCAAGCTCGATTTGAACAGTATGGCCCGGCTTTTCTGGCACG 1687 | | || ||| | ||||| ||||| || ||||||| ||||| ||||| ||||||| || Sbjct 21521 TAGGCCTTGACTTAGCGCGTAAGCTAGACCTGAACAGCATGGCACGGCTGTTCTGGCGCG 21462 Query 1688 ACATCGACGGGCGGCGGCATTACTTCTGCGTTGCGCCGCGGTTCTGGGTGCCCGAAGACA 1747 | |||||||| || ||||||| | | | ||||||||||||||| ||| | |||| Sbjct 21461 ATATCGACGGTAAACGCCATTACTATTCCATATCGCCGCGGTTCTGGGCGCCGTATGACA 21402 Query 1748 CCGTGCGCAATACCGAAAACCGTCGTATGGCGGAGCGATATCAGGCGTGGGTCAATCAGG 1807 | | | || || || |||||||| ||||| |||| | ||| | |||| Sbjct 21401 CGATATACGATGTGGATAATAAGCGTATGGCTGAGCGCCTTCAGACTTGGCTTG--CAGG 21344 Query 1808 GCTGTTTGCTCGAAA---CGGATGGCGCGGAGATCGACTATCGCGACATTCT-------- 1856 | | ||||| | | || ||||| || | |||||||| | ||||| Sbjct 21343 TGGATAT-CTCGAGAGCACAGACGGCGCTGAAGTTGACTATCGGGCTATTCTGGCCGCTG 21285 Query 1857 -CGAGGAGGCGAAGGATGCGAACCGGTTGTGTCCGGTGCAATGCACTCCGCTCGACCCGC 1915 || |||| | || || || |||| || | ||| |||| || | ||||| Sbjct 21284 CCGTGGAGACTAACGAGGCCAACCCAGTG------GCGCA-TGCAG--CGATAGACCCTA 21234 Query 1916 ACGGCGCAACGAACCTGTCGCACCAGCTTGCGGACGAAGGGTTGACGCCAGTCACCATCG 1975 ||| || || ||| ||| ||| | ||||| || || ||||||||||| ||| Sbjct 21233 GCGGAGCTACCGCGCTGAGCCACGGGCTGGATGACGAGGGCTTAACGCCAGTCACTATCA 21174 Query 1976 TGCAGAACTACACGAACATGTCGGACCCAATGAAGGAGCTTGAAGCGGCGATTACGTCGG 2035 | || |||| | | ||||| |||||||||||||| || ||||| || || | | Sbjct 21173 TTCAAAACTTTCAGCATATGTCAGACCCAATGAAGGAACTCGAAGCAGCAATAGAAGCCG 21114 Query 2036 GCCGGTTCCATCACGACGGAAACCCGATCATGACATGGTGCGTTAGCAACGTCATCGGCA 2095 | || ||||||||||||||||||||||||||||||| || | ||||| || ||||| | Sbjct 21113 GTCGATTCCATCACGACGGAAACCCGATCATGACATTCTGTATCAGCAATGTGATCGGTA 21054 Query 2096 AGAACTTGCCGGGCAATGACGACGTGGTGCGCCCGATCAAGCAGGGTAACGACAACAAAA 2155 | || | ||||| |||||||| || || | || | ||| || ||||||||||| Sbjct 21053 AATACCTTCCGGGTAATGACGATGTCGTCAGGCCAGTGAAGGAGTCGGCCGACAACAAAA 20994 Query 2156 TCGACGGCGCTGTTGCGCTCATCATGGCGGT 2186 | ||||| || || || | || ||||| || Sbjct 20993 TAGACGGTGCCGTCGCATTGATAATGGCTGT 20963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170390191300420