Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq43985 253 3e-62 >seq43985 Length=4878 Score = 253 bits (280), Expect = 3e-62 Identities = 549/811 (68%), Gaps = 23/811 (3%) Strand=Plus/Minus Query 62591 ATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTT 62650 |||||| || || || || ||| | || ||| |||| || ||||| | || | || Sbjct 2164 ATATTGAAGTATTCCTTTGCTGACTGGTGAGCCTTCATAAGTTTCATAAGTACCATATTT 2105 Query 62651 CTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTT 62710 ||||| | || ||| || || |||||||| || || || || |||||||| || | | Sbjct 2104 TTCAGCCAATTCACAGCTAGCTTCTAATGCGCCATAGTACATAGTTTCAAAAATTTGTTG 2045 Query 62711 ATTTA-GATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCG 62769 ||||| || | || | | ||| || |||| ||| | || || || ||||| | Sbjct 2044 ATTTAAGAGCGCA-GCCTGCTCGCTCTCGTATGGGTAACGCATAAGGATTAAAGCGTCTG 1986 Query 62770 CTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTG 62829 | || ||||| | ||||| || ||||| | |||||| |||||| | | || || | Sbjct 1985 CAAAACCTTGTATGCCAATGCCAATAGGGCGATGTCTGAAATTAGACTTCTTTGCCTCGG 1926 Query 62830 GAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGA 62886 | | ||||||| ||| || || || |||||||| ||||| | | ||| | | | | | Sbjct 1925 GCAATGGATAATGATTTATGTCGATGATTTTATTTAGATTACGTGTTACAGTCATTGTAA 1866 Query 62887 CCACATCCTTCA---GTTTGAGAAAATCAAATCGCCCATCTATT---ACAAACATGTTCA 62940 || ||||||| | || |||||| | ||| | |||||||| || | Sbjct 1865 CC---TCCTTCAAACGCTT---AAAATCGTACGTTTTTTCTGGTGTAACAAACATATTGA 1812 Query 62941 ATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCT 63000 ||||| ||||| | |||||| || || || |||| | | | ||| | | ||| | Sbjct 1811 GTGCAATCGATGCTAAATTACAAACAGCCACTTCATCTGGTGCTGAATACTCAACTATTT 1752 Query 63001 CAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTAC 63060 | || || | ||||||||| || ||||| || | ||||||||||||||||||| | |||| Sbjct 1751 CTGTACATAAATTACTACATTTAATAGTGCCAATATTTTGTTGATTACTCTTTCTATTAC 1692 Query 63061 ACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTT 63120 | |||||||| || || || |||| || || || || | || ||||| ||||| || Sbjct 1691 ATGCATCCTTGTACAGCATATATGGTGTGCCTGTCTCTACTTGCGATTCAATAATGGCAA 1632 Query 63121 TCCAGACGAC-TCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTT--TCGTATAGAG 63177 ||| | ||| | | || |||| | | || || | | | |||| || ||| || Sbjct 1631 ACCA-AAGACTTTGTGCTTTTACTTT--CTTATTAGCGCGTCCGTCTTGCTCATATTTAG 1575 Query 63178 TATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGAC 63237 |||| ||| ||| || || || ||||| || | | ||| | ||||| | | |||| Sbjct 1574 TATATAATTTTTCAAATTCATCGCCCCATACCTCATGCAAGCCGGGACACTTGTGTGGAC 1515 Query 63238 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 63297 |||| | |||||| ||| | | | | | || ||||||||||| ||||| |||||||| | Sbjct 1514 ACATAAGCGACCAATCTTCATTAGCTTCAACACGTTTCATAAAAAGATCTGGAATCCATA 1455 Query 63298 GAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 63357 || ||||| |||||| | |||||| || || | || ||||| || || | ||| | Sbjct 1454 ATGCATAAAATAAATCTCTAGCTCTATGCTCTTCTGTGCCAGTATTTTTCTTTAAATCCA 1395 Query 63358 GGAACGCCATAATATCAGAATGCCACGGTTC 63388 || | | ||||| | |||||| ||||| Sbjct 1394 AAAATTCAAATATATCTGCATGCCATGGTTC 1364 Score = 129 bits (142), Expect = 7e-25 Identities = 258/380 (68%), Gaps = 3/380 (1%) Strand=Plus/Minus Query 62121 TAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGAT 62180 |||||||| ||| || || ||| |||| | || || |||| ||| ||||| | ||| Sbjct 2681 TAAAAATGTATAGATGTAAGCTTGCCATAATTTGGTTCAGCTACATGAATATTAAACGAT 2622 Query 62181 TGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCA 62240 ||||||||||||||||| || || | || || ||||| || || | ||||| | Sbjct 2621 TGACTTTGATCGATGAATGCGCCACGATCGGCTGCCATCTTCATTGTAGTCTTCACCGAT 2562 Query 62241 ATTTCCCAAATAGTTTTATAAACT-CGCTTAATATCTTCTGGAAGGTTTGTATTC--TGA 62297 || ||||||| ||||| |||| | | | || | | | | | || || || | || Sbjct 2561 ATCTCCCAAACTGTTTTGTAAAGTTCACGTATTTTTGTTGGTATGGATTCAATACCTTGT 2502 Query 62298 ATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCG 62357 || || |||| | ||||| || || || || |||| ||| || || Sbjct 2501 ATTGAACCACGGCTTGTTATAATTTTAGATTTCATATCTTCATCCCACAAACCCAATTCA 2442 Query 62358 GTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGA 62417 || | | | | | | ||| | ||||| ||||| ||||| || || | ||| | ||| Sbjct 2441 GTGAGATCGCGTAACAAATGATGATTAACAACTTGAAATTCACCCGAAAGTACGCGTCGA 2382 Query 62418 GTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTT 62477 | |||||||| || || ||||| | ||| |||||||| |||| |||||| |||||| Sbjct 2381 TTATAAATATTTGAAGTGTAGGGTTCAAACGATTCATTATTGCCCATAATTTGTGCAGTT 2322 Query 62478 GATGCAGTCGGCATAGGTGC 62497 |||||||| |||||||| || Sbjct 2321 GATGCAGTGGGCATAGGGGC 2302 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 63681 GTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAG 63740 || || || || || ||||| | ||| || || | |||||| || |||||| | | Sbjct 1042 GTTGGTGACGCATGTGTAAAATAACGTTCTGAGAGCAAATTGTATGTTTCAATAACAGCA 983 Query 63741 TCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63800 || |||||| | || || || | | || ||||||||||| ||||| || | ||| Sbjct 982 TCAATATCCTCTCCGTGTATACCAATGGATACGCGCATTAACATATGCTGTGGACGCTCA 923 Query 63801 ACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 63860 |||||||| || | ||| | || || || ||||| ||||||||||||||||| Sbjct 922 ACAATTTTACCATTCAGTTTAAGTAAATAAGAACGTTCCAGCGTTTTAAAACCAAAATAA 863 Query 63861 TTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATT 63898 || || ||| || || || || || ||| | ||||| Sbjct 862 TTATAACCAAAATCACGATCATAGATTATAGCTGAATT 825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628722929774880