Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_003356.1 Length=42575 Score E Sequences producing significant alignments: (Bits) Value seq139046 271 2e-68 seq6040 102 2e-17 seq134117 98.7 3e-16 >seq139046 Length=22897 Score = 271 bits (300), Expect = 2e-68 Identities = 946/1460 (65%), Gaps = 30/1460 (2%) Strand=Plus/Minus Query 22531 CCACACACCAAAGGGGAGTGGGCATTTAAACGGATGCCCATTACGCTTGAACCCTGGCAG 22590 || ||||| ||||| || ||||| || ||||| || | ||| ||||| |||||| Sbjct 22407 CCTCACACAAAAGGTGAATGGGCTGCGAAGGGGATGAAGATCAAGCTCGAACCGTGGCAG 22348 Query 22591 TTGTTCTGTATTTGTGTTGTGTTT-GGGTGGGTGAGAAAAAAGAGCGGCCTGCGTCGATT 22649 | ||| || || | | || || |||||| || | ||| | ||| ||||| || Sbjct 22347 TCTTTCGGT-TTGGGGATGATTTACGGGTGGTTGCGCAAAGGGTCAGGCTATCGTCGTTT 22289 Query 22650 TCGCGAGGCTTACAACGAAATACCCCGTAAAAACGGGAAATCAGCAATGTCTGCTGGCGT 22709 ||| ||||| || |||| | |||||||||||||| || || | || | || || | Sbjct 22288 TCGTGAGGCGTATTTCGAAGTTCCCCGTAAAAACGGTAAGTCTGTTCTGGCCGCCGGGAT 22229 Query 22710 TGGTCTGTATATGTTTGCCTGCGATGATGAATTTGGCGCTGAAGTGTATTCCGGGGCCAC 22769 || | ||||| | | |||| || || ||||| ||||| || || || || || Sbjct 22228 AGGCGTTGCGATGTTCGTCGCCGATCGCGAGTTCGGCGCCGAAGTATACTCAGGCGCAAC 22169 Query 22770 AACAGAGAAACAGGCGTGGGAAGTTTTTCGTCCAGCCAGACTGATGGCGCA---ACGCAC 22826 ||| ||||||||||| ||| ||||| || || |||||| | ||| || | || | Sbjct 22168 GACACAGAAACAGGCGATGGAGGTTTTCCGCCCGGCCAGAATCATGATACAGAAAAGCCC 22109 Query 22827 GGAACCATTGCGTGAAGCATTTGGTATTGAAGTACATGCTCAAAGCATGAGCCGTCCGGA 22886 |||| ||| |||| |||||| | || |||| |||| || ||||||| Sbjct 22108 AGAAC---TGCAACAAGCCGCAGGTATTCAGGTGAATGCCCAAACTTTG-GCCGTCCCCG 22053 Query 22887 GGAC-GGTGCCCGTTTTGAACCGTTGATTGGAGATCCCGGAGACGGCGCGTCGCCGAGTT 22945 | | || |||| ||||||||| | | || ||||||||||| || || || | Sbjct 22052 GCAATGGCTCCCGGTTTGAACCGGTCGTAGGCGATCCCGGAGATGGTGCAAGCCCCTCCT 21993 Query 22946 GCGCCCTCATTGATGAATATCACGAGCATCAGACCGATGCGCTTTACCAGACGATGCAAA 23005 |||| | || ||||||| |||||| || |||||| || || || | || |||| | Sbjct 21992 GCGCGATTATCGATGAATTTCACGAACACCAGACCTCAGCACTGTATGACACTATGCTCA 21933 Query 23006 CTGGGATGGGGGCACGTCGTCAGCCGCTGATTTTTGGTATCACCACTGCGGGCTATAACA 23065 | || ||||| || || || |||||| | | || ||||| || || || || Sbjct 21932 CCGGTATGGGCGCCCGCCGGCAGCCGTTACTATTCATCATCACGACGGCAGGGTACCTGC 21873 Query 23066 TTGAAGGACCATGCTACGACAAACGTCGTGAAGTGATCGAAATGCTTGAAGGGATTGTGC 23125 |||| || || |||||| ||| ||| ||| | |||||||| || || ||||| Sbjct 21872 TTGACGGCCCGTGCTACACCAAGCGTAAAGAATGCCTAGAAATGCTCGACCAGACTGTGC 21813 Query 23126 CCAATGATGAACTGTTCGGGATTATTTATACCATTGACGACGGGGATGACTGGACAGATC 23185 | |||| || || || | ||||| | | || || | |||||| |||||||||| Sbjct 21812 CAGATGAGGAGCTTTTTGCCTATATTTGGGACTTGGATGAGGAGGATGATTGGACAGATC 21753 Query 23186 CGGCGGTATTGCGTAAAGCGAACCCCAATATGGGGATTTCTGTCTACAGCGATTACCTGT 23245 ||||| ||| |||||| ||||| ||| | || | || || | | | |||| || | Sbjct 21752 CGGCGAATTTGGCTAAAGCAAACCCGAATCTCGGCGTGTCCGTATTCCGAGATTTTCT-T 21694 Query 23246 TATCTCAACAGCGCGC---GGCAATTAACAACCCACGAAAAGTGGGCGTATTCAAAACGA 23302 | | |||| ||| ||| | || | ||| || | || |||||||| | Sbjct 21693 GAGAGC--CAGCTCGCTAAGGCTGTAAATCAGCCAAGATTCGCCGGAACGTTCAAAACAA 21636 Query 23303 AACATCTGAATATCTGGGTGGCAGCAAAAGACGCCTTCTTCAATCTTGTGAACTGGCAGA 23362 | ||| |||| ||| || |||||| | ||| ||||| | || |||||| | | Sbjct 21635 AGCATTTGAACCAGTGGACCGCCTCAAAAGCAGGCTTTTTCAACATGGTTAACTGGAATA 21576 Query 23363 AATGTGAAGACAGGAGTCTGACGCTGGAGCGTTTTGAGGGGCA-TACCTGCATCCTGGCG 23421 | || ||||| | | |||||| | || | || | || | | | || ||| Sbjct 21575 AGTGCGAAGATAAAACGCTGACGTTAGACCAATTCTACGGCAACGAAGTTAATTTAGGC- 21517 Query 23422 TTTGACCTTGCGCGAAAGCTGGATTTGAACGCGATGGTACGGCTTTTTACCCGAGAGATT 23481 ||||| | ||||| ||||| || ||||| |||| |||||| || || || || Sbjct 21516 CTTGACTTAGCGCGTAAGCTAGACCTGAACAGCATGGCACGGCTGTTCTGGCGCGATATC 21457 Query 23482 GACGGTAAAACGCATTATTATTGTGTCGCACCCAAGTTTTTTGTTCCCTACGACACAATC 23541 ||||||||| ||||| |||| | | || ||| | | || || ||||| || Sbjct 21456 GACGGTAAACGCCATTACTATTCCATATCGCCGCGGTTCTGGGCGCCGTATGACACGATA 21397 Query 23542 TACAGCGCTGATGTGACAGACAGTCGCACAGCAGAACGTTATCAGAAGTGGGTTGAAGGG 23601 ||| |||||| | | || | || || || ||||| ||| ||| ||| Sbjct 21396 TAC------GATGTGGATAATAAGCGTATGGCTGAGCGCCTTCAGACTTGGCTTGCAGGT 21343 Query 23602 GGATTTATTACCGTTACCGATGGCGCGGAAATTGATTACCGGGAGATCCTTGAGTCTGCG 23661 |||| | | || || ||||| ||| |||| || |||| || || | |||| Sbjct 21342 GGATATCTCGAGAGCACAGACGGCGCTGAAGTTGACTATCGGGCTATTCTGGCCGCTGCC 21283 Query 23662 AAAGAAGCAAATCGCTTAAACGCAGTGGAGGAGTCACCTATAGATCCCCACGGAGCCACA 23721 || | || ||| |||||| | | || | ||||| || |||||| || Sbjct 21282 GTGGAGACTAACGAGGCCAACCCAGTGGCGCATGCAGCGATAGACCCTAGCGGAGCTACC 21223 Query 23722 AACCTTTCTCACCACCTTGCTGATGAAAACTTAAACCCTATTACCATCATTCAGAAC-TA 23780 || ||| || | ||| || ||||| || | || |||||||| ||| | Sbjct 21222 GCGCTGAGCCACGGGCTGGATGACGAGGGCTTAACGCCAGTCACTATCATTCAAAACTTT 21163 Query 23781 CACCAATATGTCGGATCCCATGAAGGAACTTGAGGCGGCTATTGAGGCCGGGCGTTTTCA 23840 || | ||||||| || || ||||||||||| || || || || || ||||| || || || Sbjct 21162 CAGC-ATATGTCAGACCCAATGAAGGAACTCGAAGCAGCAATAGAAGCCGGTCGATTCCA 21104 Query 23841 TCATGATGGTAATCCTGTGATGACATGGTGTATCAGCAACGTGATTGGAAAGCACATTCC 23900 ||| || || || || | ||||||| ||||||||||| ||||| || || || |||| Sbjct 21103 TCACGACGGAAACCCGATCATGACATTCTGTATCAGCAATGTGATCGGTAAATACCTTCC 21044 Query 23901 CGGCGACGATGATGTTGTTCGTCCGATCAA--ACAAGGCAACGAAAACAAAATCGATGGT 23958 || | || ||||| || | || | || | ||| ||| |||||||| || ||| Sbjct 21043 GGGTAATGACGATGTCGTCAGGCCAGTGAAGGAGTCGGC--CGACAACAAAATAGACGGT 20986 Query 23959 GCTGTGGCGCTGATTATGGC 23978 || || || |||| ||||| Sbjct 20985 GCCGTCGCATTGATAATGGC 20966 >seq6040 Length=129903 Score = 102 bits (112), Expect = 2e-17 Identities = 89/107 (83%), Gaps = 3/107 (3%) Strand=Plus/Plus Query 17129 TAGTTACGTACCGTTATTATCCTGCGCC-CGGCCCTTTAGCTAAGT-GGTGAGAGCGAGC 17186 |||||| |||||| || ||||||| || |||||| |||||| ||| ||| ||||| || Sbjct 118247 TAGTTAACTACCGT-ATAATCCTGCACCGCGGCCCCTTAGCTCAGTTGGTTAGAGCACGC 118305 Query 17187 GACTCATAATCGCCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCA 17233 ||||||||||||| |||| ||||||||| ||||| | ||||||||| Sbjct 118306 GACTCATAATCGCTTGGTCACTGGTTCAAGTCCAGTAGGGGCCACCA 118352 >seq134117 Length=1710 Score = 98.7 bits (108), Expect = 3e-16 Identities = 119/160 (74%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 136 TTGCTGTCAGTCATCCATGCTCCGTATACATTGAAAACCATCTGGGC--ACTTGCATGGC 193 ||| | || |||||||| || || || ||| ||||||||||||| | ||| || | Sbjct 50 TTGTTTTCCGTCATCCACTTCCCATAAACGTTGTAAACCATCTGGGCTGAATTG--TGCC 107 Query 194 CCATCTGGCTGGCAATGAAGCTTGGATTTGCTCCGGCAGATAATGACCAGCACGCATAAG 253 |||||||| ||||||||||| | |||||| | || ||| || | |||||| ||| | | Sbjct 108 CCATCTGGTTGGCAATGAAGTTAGGATTTACACCCGCACTCAAAGCCCAGCATGCAAACG 167 Query 254 TGTGTCGTGACTGGTATGCCTTTCGATGCCTGATGCCTGC 293 ||||||| | | || ||| |||||||||| | ||||| Sbjct 168 TGTGTCGCGTTTCATAAGCCCTTCGATGCCTCAACCCTGC 207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135893645211324