Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq43985 286 3e-72 >seq43985 Length=4878 Score = 286 bits (316), Expect = 3e-72 Identities = 909/1413 (64%), Gaps = 66/1413 (5%) Strand=Plus/Minus Query 37270 CCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTT 37329 |||||| || ||| ||| ||| | | || ||||||||| | || ||||| || || Sbjct 2235 CCATGTTGTTTTATTTTCTCTTTCAATACAGACCAATCCCAGAGGTCAGTTGGTTTTTTA 2176 Query 37330 AACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAA 37389 ||||||||||||||| || || ||||| || |||| || | | ||| || |||||| Sbjct 2175 TCCCACATATCATATTGAAGTATTCCTTTGCTGACTGGTGAGCCTTCATAAGTTTCATAA 2116 Query 37390 GGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCG 37449 | || || ||| ||| | ||| || |||| ||||| |||| |||| || || ||||| Sbjct 2115 GTACCATATTTTTCAGCCAATTCACAGCTAGCTTCTAATGCGCCATAGTACATAGTTTCA 2056 Query 37450 AAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATA 37509 ||||||||| |||||| | || | ||||| ||| ||| || | || | || Sbjct 2055 AAAATTTGTTGATTTAAGAGCGCAGCCTGCTCGCTCTCGTATGGGTAACGCATAAGGATT 1996 Query 37510 AACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTA 37569 || | || || ||||| || | || || || || || | |||| | |||||| | Sbjct 1995 AAAGCGTCTGCAAAACCTTGTATGCCAATGCCAATAGGGCGATGTCTGAAATTAGACTTC 1936 Query 37570 GACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGT 37629 | || || |||||||| ||| || || || |||||||||||||| || || Sbjct 1935 TTTGCCTCGGGCAATGGATAATGATTTATGTCGATGATTTTATTTAGATT----AC--GT 1882 Query 37630 ATTTTCGTAATTATTCTCAACTTGTCGAA--CATAAA----TACGTTATT-----ATTAA 37678 || || ||| | | || || || | |||| |||||| || ||| Sbjct 1881 GTTACAGTCATTGTAACCTCCT--TCAAACGCTTAAAATCGTACGTTTTTTCTGGTGTAA 1824 Query 37679 CAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAA 37738 |||| || | | | ||| ||| ||| |||||| ||||| ||||||||| | | || | Sbjct 1823 CAAACATATTGAGTGCAATCGATGCTAAATTACAAACAGCCACTTCATCT--GGTGCTGA 1766 Query 37739 AT--TGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATT 37796 || | | || |||||||| | |||||| || |||| || || | ||| |||||| Sbjct 1765 ATACTCAACTATTTCTGTACATAAATTACTACATTTAATAGTGCCAATATTTTGTTGATT 1706 Query 37797 GGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGC 37856 ||| ||||||| | ||| || || || ||||| || || ||| |||| ||| | Sbjct 1705 ACTCTTTCTATTACATGCATCCTTGTACAGCATATATGGTGTGCCTGTCTCTACTTGCGA 1646 Query 37857 CTCGATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTAAtttttttCTTTGT 37916 || ||||| | ||| | |||| |||||| || || ||| | | | Sbjct 1645 TTCAATAATGGCAAACCAAAGACTTTGTGCTTTTACTTTCTTATTAGCGCGTCCGTCTTG 1586 Query 37917 TTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACA 37976 || |||| |||||||||| | ||| |||| |||||||| || || || ||||| Sbjct 1585 CTCATATTTAGTATATAATTTTTCAAATTCATCGCCCCATACCTCATGCAAGCCGGGACA 1526 Query 37977 TTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATC 38036 | | ||||||||| || ||||| ||||||| ||| || |||| |||||| | ||| Sbjct 1525 CTTGTGTGGACACATAAGCGACCAATCTTCATTAGCTTCAACACGTTTCATAAAAAGATC 1466 Query 38037 AGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTT 38096 || | |||||||||| |||||||||| | | ||||| ||||| | || ||| || Sbjct 1465 TGGAATCCATAATGCATAAAATAAATCTCTAGCTCTATGCTCTTCTGTGCCAGTATTTTT 1406 Query 38097 TCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTA---------------- 38140 |||| | ||| || |||||||| || ||||||||||||| Sbjct 1405 CTTTAAATCCAAAAATTCAAATATATCTGCATGCCATGGTTCTANNNNNNNNNNNNNNNN 1346 Query 38141 -------------TATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATA 38187 |||| |||| |||| || |||| | | Sbjct 1345 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTCGTTTACCACCGCCTTGATCTACA 1286 Query 38188 TATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTT 38247 || | || ||||| ||| || ||||| ||||| | |||||| ||| |||| ||| Sbjct 1285 TAACGTGCTACATTATTGAATACCCTCAACATTGGTACCAAACCATTCGATGTGCCATTT 1226 Query 38248 ATACCGGATATATAAGTACCCTTAGCTCGTAT---AT-TACTTATCGACAATCCTATTCC 38303 | || | || ||||| || |||||||| || ||| || | | ||| || || Sbjct 1225 GTGCCCGCAATTGCTGTACCTTTTGCTCGTATGCAATGTAC--ATTG--AGTCCAATACC 1170 Query 38304 ACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTAT--- 38360 ||| || ||| || |||||||| ||||| | | | ||||| || || || Sbjct 1169 ACCAGCTGATTTGGAAATTAAAGCACATTGATGTGCTGAGGTGAATATGCCATCAATTGA 1110 Query 38361 ACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGC 38420 | | | || || | | | ||||| || | || || | ||| | || Sbjct 1109 ATCGGAAACC---ATAGTCAAAAGGAAACATGATGATAGCTGTGGTTGTCTAGTAGCTGC 1053 Query 38421 GTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTC 38480 || | ||| || || |||||| | || | ||| || | |||| |||||||| Sbjct 1052 AGCGAAAAGTGTTGGTGACGCATGTGTAAAATAACGTTCTGAGAGCAAATTGTATGTTTC 993 Query 38481 TATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTG 38540 || ||| |||| ||||| | ||||| ||||| | ||||| | ||||| |||||| || Sbjct 992 AATAACAGCATCAATATCCTCTCCGTGTATACCAATGGATACGCGCATTAACATATGCTG 933 Query 38541 TGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTAT 38600 ||| | || | |||||| |||| ||||||||| ||| || ||| | ||||| | Sbjct 932 TGGACGCTCAACAATTTTACCATTCAGTTTAAGTAAATAAGAACGTTCCAGCGTTTTAAA 873 Query 38601 TCCAAAATAACTATATGAATAATCTCTATCGTA 38633 ||||||||| |||| | |||| | ||| || Sbjct 872 ACCAAAATAATTATAACCAAAATCACGATCATA 840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467710468758240