Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq43985 251 9e-62 >seq43985 Length=4878 Score = 251 bits (278), Expect = 9e-62 Identities = 532/783 (68%), Gaps = 23/783 (3%) Strand=Plus/Minus Query 65412 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 65471 || ||| |||| || || || | || | || ||||| | |||||| || || |||||| Sbjct 2136 GAGCCTTCATAAGTTTCATAAGTACCATATTTTTCAGCCAATTCACAGCTAGCTTCTAAT 2077 Query 65472 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTA-GATCTTGTGCTTCCAGGCTATC 65530 || || || || || ||||| || || | | ||||| || | || | | ||| || Sbjct 2076 GCGCCATAGTACATAGTTTCAAAAATTTGTTGATTTAAGAGCGCA-GCCTGCTCGCTCTC 2018 Query 65531 AAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGG 65590 |||| ||| | || || || |||||||| || ||||| | ||||| || ||||| Sbjct 2017 GTATGGGTAACGCATAAGGATTAAAGCGTCTGCAAAACCTTGTATGCCAATGCCAATAGG 1958 Query 65591 TCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 65650 | |||||| |||||| | | || || || | ||||||| ||| || || || || Sbjct 1957 GCGATGTCTGAAATTAGACTTCTTTGCCTCGGGCAATGGATAATGATTTATGTCGATGAT 1898 Query 65651 TTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCA---GTTTGAGAAAATC 65704 |||||| ||||| | | ||| | | | | ||| ||||||| | || |||||| Sbjct 1897 TTTATTTAGATTACGTGTTACAGTCATTGTAACC---TCCTTCAAACGCTT---AAAATC 1844 Query 65705 AAATCGCTCATCTATT---ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGC 65761 | | ||| | |||||||| || | ||||| ||||| | ||||||||| || Sbjct 1843 GTACGTTTTTTCTGGTGTAACAAACATATTGAGTGCAATCGATGCTAAATTACAAACAGC 1784 Query 65762 TACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGT 65821 || |||| | | | ||| | | ||| || || || | ||||||||| || || || Sbjct 1783 CACTTCATCTGGTGCTGAATACTCAACTATTTCTGTACATAAATTACTACATTTAATAGT 1724 Query 65822 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGT 65881 || | ||||||||||||||||||| | ||||| |||||||| || || || |||| || Sbjct 1723 GCCAATATTTTGTTGATTACTCTTTCTATTACATGCATCCTTGTACAGCATATATGGTGT 1664 Query 65882 ACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGAC-TCGAGCCTTTATTATAG 65940 || || || | || ||||| ||||| || ||| | ||| | | || |||| | | Sbjct 1663 GCCTGTCTCTACTTGCGATTCAATAATGGCAAACCA-AAGACTTTGTGCTTTTACTTT-- 1607 Query 65941 ATTTGTATCTCTTTTCTCTT--TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCA 65998 || || | | | |||| || ||| ||||| ||| ||| || || || ||||| Sbjct 1606 CTTATTAGCGCGTCCGTCTTGCTCATATTTAGTATATAATTTTTCAAATTCATCGCCCCA 1547 Query 65999 AACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT 66058 || | | ||| || ||||| | | |||||||| | |||||| ||| | | | | | Sbjct 1546 TACCTCATGCAAGCCGGGACACTTGTGTGGACACATAAGCGACCAATCTTCATTAGCTTC 1487 Query 66059 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATG 66118 || ||||||||||| ||||| |||||||| | || |||||||||||| | |||||| Sbjct 1486 AACACGTTTCATAAAAAGATCTGGAATCCATAATGCATAAAATAAATCTCTAGCTCTATG 1427 Query 66119 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178 || || | || ||||| || || | ||| | || | | ||||| |||||| || Sbjct 1426 CTCTTCTGTGCCAGTATTTTTCTTTAAATCCAAAAATTCAAATATATCTGCATGCCATGG 1367 Query 66179 TTC 66181 ||| Sbjct 1366 TTC 1364 Score = 138 bits (152), Expect = 1e-27 Identities = 260/380 (68%), Gaps = 3/380 (1%) Strand=Plus/Minus Query 64914 TAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGAT 64973 |||||||| ||| || || ||| |||| | || || |||| ||| ||||| | ||| Sbjct 2681 TAAAAATGTATAGATGTAAGCTTGCCATAATTTGGTTCAGCTACATGAATATTAAACGAT 2622 Query 64974 TGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGA 65033 ||||||||||||||||| || || | || || ||||| || || | ||||| | Sbjct 2621 TGACTTTGATCGATGAATGCGCCACGATCGGCTGCCATCTTCATTGTAGTCTTCACCGAT 2562 Query 65034 ATTTCCCAAATAGTTTTATAAACT-CGCTTAATATCTTCTGGAAGGTTTGTATTC--TGA 65090 || ||||||| ||||| |||| | | | || | | | | | || || || | || Sbjct 2561 ATCTCCCAAACTGTTTTGTAAAGTTCACGTATTTTTGTTGGTATGGATTCAATACCTTGT 2502 Query 65091 ATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCG 65150 || || |||| || ||||| || || || || |||| ||| || || Sbjct 2501 ATTGAACCACGGCTTGTTATAATTTTAGATTTCATATCTTCATCCCACAAACCCAATTCA 2442 Query 65151 GTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGA 65210 || | | | | | | ||| ||||||| ||||||||||| || || | ||| | ||| Sbjct 2441 GTGAGATCGCGTAACAAATGATGATTAACAACTTGAAATTCACCCGAAAGTACGCGTCGA 2382 Query 65211 GTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTT 65270 | |||||||| || || ||||| | || |||||||| |||| |||||| |||||| Sbjct 2381 TTATAAATATTTGAAGTGTAGGGTTCAAACGATTCATTATTGCCCATAATTTGTGCAGTT 2322 Query 65271 GATGCAGTCGGCATAGGTGC 65290 |||||||| |||||||| || Sbjct 2321 GATGCAGTGGGCATAGGGGC 2302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657028846310640