Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_003444.1 Length=37074 Score E Sequences producing significant alignments: (Bits) Value seq139046 289 7e-74 >seq139046 Length=22897 Score = 289 bits (320), Expect = 7e-74 Identities = 957/1466 (65%), Gaps = 43/1466 (3%) Strand=Plus/Minus Query 763 CCACACACCAAGGGGGAGTGGGCATTCAAGAGGATGCCCATCACGCTGGAACCGTGGCAG 822 || ||||| || || || ||||| ||| ||||| |||| ||| |||||||||||| Sbjct 22407 CCTCACACAAAAGGTGAATGGGCTGCGAAGGGGATGAAGATCAAGCTCGAACCGTGGCAG 22348 Query 823 CTCTTTGTGATCTGCTGTGCGTTT-GGCTGGGTCAATAAAGGCTCCCGGCTG-CGCCGCT 880 ||||| | | | || || || ||| | ||||| || |||| || || | Sbjct 22347 -TCTTTCGGTTTGGGGATGATTTACGGGTGGTTGCGCAAAGGGTCA-GGCTATCGTCGTT 22290 Query 881 TCAGGGAGGTGTATACCGAAATCCCCCGTAAGAACGGCAAATCGGCAATCTCTGCCGGTG 940 | | |||| |||| |||| | |||||||| ||||| || || | | | ||||| Sbjct 22289 TTCGTGAGGCGTATTTCGAAGTTCCCCGTAAAAACGGTAAGTCTGTTCTGGCCGCCGGGA 22230 Query 941 TTGCCCT-GTATTGTT--TTGCCTGTGATAACGAGTTCGGCGCGGAAGTGTATTCCGGTG 997 | | | | | |||| | ||| ||| |||||||||||| ||||| || || || | Sbjct 22229 TAGGCGTTGCGATGTTCGTCGCC---GATCGCGAGTTCGGCGCCGAAGTATACTCAGGCG 22173 Query 998 CCACGACAGAGAAACAGGCGTGGGAAGTCTTTCGCCCGGCGCGACTGATGTGTAAACGCA 1057 | |||||| ||||||||||| ||| || || |||||||| || | ||| || | | Sbjct 22172 CAACGACACAGAAACAGGCGATGGAGGTTTTCCGCCCGGCCAGAATCATGA-TACAGAAA 22114 Query 1058 CACCCATG-CTGACGGAAGCGTTCGGGATTGAGGTTAACGCCTCAAACATGAACCGTCCG 1116 |||| ||| |||| || ||| |||| || ||| ||||| | |||||| Sbjct 22113 AGCCCAGAACTGCAACAAGCCGCAGGTATTCAGGTGAATGCC-CAAACTTTGGCCGTCCC 22055 Query 1117 GAGGA-TGGCGCGCGGTTTGAACCGCTGATCGGCAACCCCGGTGATGGTTCATCACCCCA 1175 | | |||| | |||||||||||| | | ||| | ||||| |||||| || ||| Sbjct 22054 CGGCAATGGCTCCCGGTTTGAACCGGTCGTAGGCGATCCCGGAGATGGTGCAAGCCCCTC 21995 Query 1176 CTGTGCCGTGGTTGATGAATATCACGAGCATGCCACCGATGCGCTTTATACCACAATGCT 1235 ||| || | | ||||||| |||||| || ||| || || ||| ||| ||||| Sbjct 21994 CTGCGCGATTATCGATGAATTTCACGAACACCAGACCTCAGCACTGTATGACACTATGCT 21935 Query 1236 TACCGGGATGGGGGCGCGACGTCAGCCACTGATGTGGGCCATCACCACCGCCGGGTACAA 1295 ||||| ||||| || || || ||||| | | | |||||| || || |||||| Sbjct 21934 CACCGGTATGGGCGCCCGCCGGCAGCCGTTACTATTCATCATCACGACGGCAGGGTACCT 21875 Query 1296 CATTGAGGGGCCGTGCTACGACAAGCGGCGGGAAGTCATCGAGATGCTCAACGGCTCGGT 1355 |||| || ||||||||| |||||| ||| | | || |||||| || | || Sbjct 21874 GCTTGACGGCCCGTGCTACACCAAGCGTAAAGAATGCCTAGAAATGCTCGACCAGACTGT 21815 Query 1356 GCCTAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGACGACTGGACCGA 1415 ||| | || || || || | || | | | ||||| | || || ||||| || Sbjct 21814 GCCAGATGAGGAGCTTTTTGCCTATATTTGGGACTTGGATGAGGAGGATGATTGGACAGA 21755 Query 1416 CCCGCAGGTGCTGGAAAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTT 1475 ||| | ||| ||||| || || ||| | |||||||| || | || || |||| Sbjct 21754 TCCGGCGAATTTGGCTAAAGCAAACCCGAATCTCGGCGTGTCCGTATTCCGAGA--TTTT 21697 Query 1476 GTTAAGTCAGCAGCAGCGTGCGAA------AAATAACGCCCGTCTGGCA--AACGTCTTT 1527 || || ||| |||| || || |||| | | | | || ||||| | Sbjct 21696 CTTGAG--AGC--CAGCTCGCTAAGGCTGTAAATCAGCCAAGATTCGCCGGAACGT--TC 21643 Query 1528 AAAACAAAACACCTCAATATCTGGGTGTCGGCGCGTTCGGCGTATTTCAACCTGGTGAGC 1587 |||||||| || | || ||| | | | | | ||||||| |||| | | Sbjct 21642 AAAACAAAGCATTTGAACCAGTGGACCGCCTCAAAAGCAGGCTTTTTCAACATGGTTAAC 21583 Query 1588 TGGCAGAGCTGCGAGGATAAATCACTGACCCTTGAGCAGTTCGAGGGGCA-GCCGTGCAT 1646 ||| | | ||||| |||||| | ||||| | || || ||| | || | | || || Sbjct 21582 TGGAATAAGTGCGAAGATAAAACGCTGACGTTAGACCAATTCTACGGCAACGAAGTTAAT 21523 Query 1647 TCTGGCCTTTGACCTGGCGCGTAAGCTGGATATGAACAGCATGGCGCGACTTTATACCCG 1706 | |||||| ||| | ||||||||||| || ||||||||||||| || || | || Sbjct 21522 TTAGGCCTT-GACTTAGCGCGTAAGCTAGACCTGAACAGCATGGCACGGCTGTTCTGGCG 21464 Query 1707 CGAGATTGACGGTAAAACGCATTACTACAGTGTGGCCCCGCGCTTCTGGGTACCGTATGA 1766 ||| || ||||||||| |||||||| | | ||||| ||||||| |||||||| Sbjct 21463 CGATATCGACGGTAAACGCCATTACTATTCCATATCGCCGCGGTTCTGGGCGCCGTATGA 21404 Query 1767 CACGGTGTACAGCGTCGAGAAAAATGAAGATAGACGGACAGCCGAACGCTTTCAGAAATG 1826 |||| | ||| || || | ||| || | || || ||| |||||| || Sbjct 21403 CACGATATACGATGTGGATA---------ATAAGCGTATGGCTGAGCGCCTTCAGACTTG 21353 Query 1827 G-GTGGAAATGGGCGTCCTGACCGTTACCGATGGTGCTGAGGTGGATTATCGCTACATCC 1885 | || | ||| || || | || || || ||||| || || ||||| || | Sbjct 21352 GCTTGCAGGTGGATATCTCGAGAG-CACAGACGGCGCTGAAGTTGACTATCGGGCTATTC 21294 Query 1886 TCGAGGAGGCCAAAGCGGCGAACAAAATCAGCCCGGTCAGTGAGTCACCCATCGACCCCT 1945 | | | ||| | | | ||| | || ||| || | || | || ||||| Sbjct 21293 TGGCCGCTGCCGTGGAGACTAACGAGGCCAACCCAGTGGCGCATGCAGCGATAGACCCTA 21234 Query 1946 TCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGATCTGAATCCCGTCACTATCG 2005 ||| || |||| |||| || | || | ||| || | | | || ||||||||| Sbjct 21233 GCGGAGCTACCGCGCTGAGCCACGGGCTGGATGACGAGGGCTTAACGCCAGTCACTATCA 21174 Query 2006 TCCAGAACTTCGCCAATATGTCCGATCCGATGAAAGAGCTGGAAGCAGCGATTGAATCGG 2065 | || ||||| ||||||| || || ||||| || || |||||||| || ||| | | Sbjct 21173 TTCAAAACTTTCAGCATATGTCAGACCCAATGAAGGAACTCGAAGCAGCAATAGAAGCCG 21114 Query 2066 GACGCTTTCATCATGACGGCAATCCCATCATGACCTGGTGTATCGGCAATGTGGTCGGCA 2125 | || || ||||| ||||| || || |||||||| | |||||| |||||||| |||| | Sbjct 21113 GTCGATTCCATCACGACGGAAACCCGATCATGACATTCTGTATCAGCAATGTGATCGGTA 21054 Query 2126 AAAACATGCCAGGTAACGATGATTTAGTGAAGCCCGTCAAGGAGCAGGCGGAAAACAAAA 2185 || || | || ||||| || ||| | || | ||| || |||||| ||| || ||||||| Sbjct 21053 AATACCTTCCGGGTAATGACGATGTCGTCAGGCCAGTGAAGGAGTCGGCCGACAACAAAA 20994 Query 2186 TCGATGGTGCGGTTGCACTGATTATG 2211 | || ||||| || ||| |||| ||| Sbjct 20993 TAGACGGTGCCGTCGCATTGATAATG 20968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118319511109072