Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq88566 134 1e-26 seq43985 131 2e-25 seq119770 111 2e-19 seq123102 109 5e-19 seq21876 105 7e-18 seq138766 96.9 3e-15 >seq88566 Length=1870 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | |||||| ||||| || | |||||| || ||||||||||||||||| | | Sbjct 230 CCTCCTCTGAGACGCAATACTAAATGCAACGTAGATTCCTTTTGAATGTTATAATCACCC 289 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| |||||||| |||||| | || | |||||||||||| || || Sbjct 290 AAAGTTCGTCCGTCTTCCAGCTGTTTGCCAGCAAAAATTAAACGTTGCTGATCTGGTGGA 349 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || ||| | || | ||| | ||||| | || |||| || || || Sbjct 350 ATTCCTTCCTTATC-TTGAATCTTGGCTTTGACATGTTCAATAGTATCGGAAGGTTCAAC 408 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || | || || || || | ||||| |||||||||||||| Sbjct 409 CTCAAGTGTGATGGTTTTACCCGTAAGGGTTTTAACGAATATTTGCAT 456 >seq43985 Length=4878 Score = 131 bits (144), Expect = 2e-25 Identities = 411/628 (65%), Gaps = 23/628 (4%) Strand=Plus/Minus Query 153191 AAGCAACGAATTACGTAATCCGTGTTTTTGTATGTTCATCTTCAATTGTGACCAGTCCCA 153250 ||| || || || |||| || |||| || ||| ||| |||||| ||||| ||||| Sbjct 2254 AAGTAAAGAGTTGCGTACGCCATGTTGTTTTATTTTCTCTTTCAATACAGACCAATCCCA 2195 Query 153251 TAACGAAGTAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCTTTGCT 153310 | ||| ||| | || ||||| ||| ||||| | ||| |||| ||| || Sbjct 2194 GAGGTCAGTTGGTTTTTTATCCCACATATCATATTGAAGTATTCCTTTGCTGACTGGTGA 2135 Query 153311 ACCGGCAAACGTGCTATACGGCTCAC---TGTCAGACGCCAGTTTCAAACTGGCATCGAG 153367 || || | || ||| | || | |||| ||| || | || || || | Sbjct 2134 GCCTTCATAAGTTTCATAAGTACCATATTTTTCAG---CCAATTCACAGCTAGCTTCTAA 2078 Query 153368 CGCGGCATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCAT---CGCT 153424 ||| ||| |||| |||||| |||| |||| || ||| | ||||| | |||| Sbjct 2077 TGCGCCATAGTACATAGTTTCAAAAATTTGTTGATT---TAAGAGCGCAGCCTGCTCGCT 2021 Query 153425 CACGTACGGTATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTAT 153484 | |||| || |||| | || || || || || |||||||| ||||||||||| || Sbjct 2020 CTCGTATGGGTAACGCATAAGGATTAAAGCGTCTGCAAAACCTTGTATGCCAATGCCAAT 1961 Query 153485 GGGACGATGGCGCATATTAGAtttttttGCAGCTTCAACAGGATAGAAATTGCGGTCGAT 153544 || ||||| | | |||||| || ||||| | | ||||| ||| |||||| Sbjct 1960 AGGGCGATGTCTGAAATTAGACTTCTTTGCCTCGGGCAATGGATAATGATTTATGTCGAT 1901 Query 153545 AATTTTATTTAAACTAA---TCAC-GACATGTTTCACCACAGAATGCAACAGTTGAAAAT 153600 |||||||||| | || | || | ||| | | ||| | | ||| | | ||||| Sbjct 1900 GATTTTATTTAGATTACGTGTTACAGTCAT-TGTAACCTCC---TTCAAACGCTTAAAAT 1845 Query 153601 CAAACGTTCCAT-TAATG--ATATATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGG 153657 | ||||| | | || | | | | |||| |||||||| || || || ||||| | Sbjct 1844 CGTACGTTTTTTCTGGTGTAACAAACATATTGAGTGCAATCGATGCTAAATTACAAACAG 1785 Query 153658 CAGTTTCGTCGGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCA 153717 | ||| || || || |||| | |||||||| | ||| ||||| || ||||| || Sbjct 1784 CCACTTCATCTGGTGCTGAATACTCAACTATTTCTGTACATAAATTACTACATTTAATAG 1725 Query 153718 GGCCGCAATTACTTTGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTG 153777 ||| ||| |||||| || || | ||||| || |||||||| ||||| ||||||| Sbjct 1724 TGCCAATATTTTGTTGATTACTCTTTCTATTACATGCATCCTTGTACAGCATATATGGTG 1665 Query 153778 TGCCGGTTTCGGCTTGAATTTCTATAAT 153805 |||| || || |||| ||| ||||| Sbjct 1664 TGCCTGTCTCTACTTGCGATTCAATAAT 1637 >seq119770 Length=1537 Score = 111 bits (122), Expect = 2e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| |||||| || | ||||| || || ||||||||||| || || ||| Sbjct 866 CCACCACGTAGACGCAATACCAGGTGAAGTGTTGATTCTTTTTGAATATTGTAGTCGGAT 925 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | ||||| | ||||| || || | || |||||||| ||||| || || Sbjct 926 AGAGTACGTCCA-TCTTCTAATTGTTTTCCGGCGAAAATAAGACGTTGTTGATCTGGTGG 984 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCA 139715 || |||||||| || ||| | || | ||| | || || || |||| | ||||||| Sbjct 985 AATACCTTCTTTATCC-TGAATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGCTCCA 1043 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | ||| | |||||||| || | ||||| ||||| |||||||| Sbjct 1044 CCTCTAAGGTGATGGTCTTGCCAGTTAGTGTTTTGACGAAAATTTGCAT 1092 >seq123102 Length=1410 Score = 109 bits (120), Expect = 5e-19 Identities = 167/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| ||| ||||||| || || || ||||||||||| |||||| Sbjct 590 CCACCCCGCAGACGCAGAACCAAGTGAAGTGTTGATTCCTTTTGAATGTTGTAATCGGAT 649 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||||| || | || || ||||| || || || | || | |||||| || || || || Sbjct 650 AATGTGCGTCCA-TCCTCAAGCTGCTTGCCGGCGAAAATTAAACGTTGTTGGTCTGGGGG 708 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCA 139715 |||||||| || || ||| |||||| |||| | | || | || || | || || | Sbjct 709 AATGCCTTCCTTATC-TTGAATTTTTGCTTTAACGTTCTCGATGGTATCCGAAGGTTCAA 767 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 | || | || | || ||||| ||||| ||||| || |||||||||||| || Sbjct 768 CTTCCAATGTGATAGTTTTGCCAGTCAATGTTTTAACAAATATTTGCATACCT 820 >seq21876 Length=2391 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||||| || || |||| ||| || || || |||||||| |||||| | Sbjct 738 CCACCACGTAGACGCAGGACCAAATGAAGCGTTGATTCCTTCTGAATGTTGTAATCGGAC 679 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | || || || || |||| | ||| |||||||| || || Sbjct 678 AAGGTACGGCCATCTTCCAATTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGGGGA 619 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| ||| || || | | ||| | ||||| | ||||| || Sbjct 618 ATTCCCTCCTTGTCCTGGATCTTAGCCTTAACGTTTTCGATGGTGTCAGACGGCTCAACT 559 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | |||||||| ||||| ||||||||||| ||||||||| Sbjct 558 TCCAGGGTGATAGTCTTGCCAGTCAAAGTTTTTACGAAGATTTGCATA 511 Score = 87.8 bits (96), Expect = 2e-12 Identities = 118/159 (74%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||| || || || || ||||| |||| | |||||| ||||| ||||| || ||||| || Sbjct 895 GTCCTCCAGTTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGAATACCTTCCTT 836 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTC-CACT-GTGTCGGTGGGCTCCACCTCAACGGTC 139726 ||| ||| | || | ||| | |||| || | ||||||| ||||| || || | || Sbjct 835 GTCC-TGAATCTTAGCTTTGAC-GTTCTCAATAGTGTCGGATGGCTCGACTTCTAAAGTG 778 Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || || || ||||| ||||||||||| ||||||||| Sbjct 777 ATAGTTTTCCCTGTCAAAGTTTTTACGAAGATTTGCATA 739 >seq138766 Length=1258 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 || || ||||||||||| || || || |||||| | ||| || || || ||||| Sbjct 842 TGGATTGTAGACTCTTTCTGTATATTGTAATCGGAAAGTGTTCTTCCATCCTCAAGCTGC 783 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 ||||||||| ||||||| | |||||||| || || || || ||||| || ||||| Sbjct 782 TTACCAGCAAAGATCAGTCTCTGCTGATCTGGTGGAATCCCCTCTTTATCCTGTATTTTG 723 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | || || | |||| ||||||||||| | || | || || || || Sbjct 722 GCCTTGACATTCTCAACATTTTCGGATGGCTCCACCTCCAGTGTTATTGTTTTTCCCGTT 663 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | ||||||||||| |||||||| Sbjct 662 AGTGTTTTTACGAAGATTTGCAT 640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495201803563200