Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq43985 340 3e-88 >seq43985 Length=4878 Score = 340 bits (376), Expect = 3e-88 Identities = 880/1332 (66%), Gaps = 78/1332 (6%) Strand=Plus/Minus Query 78793 TAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGAT 78852 || ||||| ||| || || ||| |||| | || || |||| ||| ||||| | ||| Sbjct 2681 TAAAAATGTATAGATGTAAGCTTGCCATAATTTGGTTCAGCTACATGAATATTAAACGAT 2622 Query 78853 TGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGA 78912 ||||||||||||||||| || || | || || ||||| || || | ||||| | Sbjct 2621 TGACTTTGATCGATGAATGCGCCACGATCGGCTGCCATCTTCATTGTAGTCTTCACCGAT 2562 Query 78913 ATTTCCCAAATAGTTTTATAAACT-CGCTTAATATCTTCTGGAAGGTTTGTATTC--TGA 78969 || ||||||| ||||| |||| | | | || | | | | | || || || | || Sbjct 2561 ATCTCCCAAACTGTTTTGTAAAGTTCACGTATTTTTGTTGGTATGGATTCAATACCTTGT 2502 Query 78970 ATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCG 79029 || || |||| || ||||| || || || ||||||| ||| || || Sbjct 2501 ATTGAACCACGGCTTGTTATAATTTTAGATTTCATATCTTCATCCCACAAACCCAATTCA 2442 Query 79030 GTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGA 79089 || | | | | | | ||| ||||||| ||||||||||| || || | ||| | ||| Sbjct 2441 GTGAGATCGCGTAACAAATGATGATTAACAACTTGAAATTCACCCGAAAGTACGCGTCGA 2382 Query 79090 GTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTT 79149 | |||||||| || || ||||| | |||||||||||| |||| |||||| |||||| Sbjct 2381 TTATAAATATTTGAAGTGTAGGGTTCAAACGATTCATTATTGCCCATAATTTGTGCAGTT 2322 Query 79150 GATGCCGTTGGCATAGGTGCCACCAATAAAC----------------------TATTT-C 79186 ||||| || |||||||| || | | |||| ||||| | Sbjct 2321 GATGCAGTGGGCATAGGGGCTAAAAGTAAAGAGTTGCGTACGCCATATTGTTTTATTTTC 2262 Query 79187 T-----------AAGAC---CGTATGATCTG-------ATTTTATCTTT---TAGAGATT 79222 | |||| |||| | || ||||| ||||| || ||| Sbjct 2261 TNNNNNNAAGTAAAGAGTTGCGTACGCCATGTTGTTTTATTTTCTCTTTCAATACAGA-- 2204 Query 79223 CCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTAC 79282 ||||||||| || |||| || || ||| | ||||||||| || || || || | Sbjct 2203 -CCAATCCCAGAGGTCAGTTGGTTTTTTATCCCACATATCATATTGAAGTATTCCTTTGC 2145 Query 79283 TAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCG 79342 | | ||| ||| || |||||||||| || | ||||| || |||||||| || | Sbjct 2144 TGACTGGTGAGCCTTCATAAGTTTCATAAGTACCATATTTTTCAGCCAATTCACAGCTAG 2085 Query 79343 CCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGA-GATCTTGTGCTTCT 79401 | |||||||| || || || || ||||| ||||| | | ||| | || | || || Sbjct 2084 CTTCTAATGCGCCATAGTACATAGTTTCAAAAATTTGTTGATTTAAGAGCGCAGCCTGCT 2025 Query 79402 AGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATA 79461 | || || |||| ||| | || || || |||||||| || ||||| | ||||| Sbjct 2024 CG-CTCTCGTATGGGTAACGCATAAGGATTAAAGCGTCTGCAAAACCTTGTATGCCAATG 1966 Query 79462 CCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATA 79521 || ||||| | |||||| |||||| | | || || || | ||||||| ||| || Sbjct 1965 CCAATAGGGCGATGTCTGAAATTAGACTTCTTTGCCTCGGGCAATGGATAATGATTTATG 1906 Query 79522 TCTATAATTTTATTGAGATTCC---TGACTATTACTTTGACCACATCCTTTA---GTTTG 79575 || || |||||||| ||||| | | || | | | | ||| ||||| | | || Sbjct 1905 TCGATGATTTTATTTAGATTACGTGTTACAGTCATTGTAACC---TCCTTCAAACGCTT- 1850 Query 79576 AGAAAATCAAATCGTCCATCTATT---ACAAACATGTTCAACGCGACAGATGCCAGATTA 79632 |||||| | | ||| | |||||||| || | || | ||||| | |||| Sbjct 1849 --AAAATCGTACGTTTTTTCTGGTGTAACAAACATATTGAGTGCAATCGATGCTAAATTA 1792 Query 79633 CAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACAC 79692 ||||| || || |||| | | | ||| | | |||||| || || | |||||||| Sbjct 1791 CAAACAGCCACTTCATCTGGTGCTGAATACTCAACTATTTCTGTACATAAATTACTACAT 1732 Query 79693 TTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATG 79752 ||||| || || | ||||||||||||||||||| | ||||| |||||||| || || || Sbjct 1731 TTAATAGTGCCAATATTTTGTTGATTACTCTTTCTATTACATGCATCCTTGTACAGCATA 1672 Query 79753 AACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTT 79811 | || || || || || | || ||||| ||||| || ||| | |||| | || || Sbjct 1671 TATGGTGTGCCTGTCTCTACTTGCGATTCAATAATGGCAAACCAAA-GACTTTGTGCTTT 1613 Query 79812 TATTATAGACTTGT-ATCTCTTTTCTCTT--TCGTATTGTGTATATAATCGTTCGAACTC 79868 || | | ||| | | | | | |||| || |||| ||||||||| ||| || || Sbjct 1612 TACTTT---CTTATTAGCGCGTCCGTCTTGCTCATATTTAGTATATAATTTTTCAAATTC 1556 Query 79869 GTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCC 79928 || ||||| || || | || || ||||| | || |||||||| | |||||| ||| | Sbjct 1555 ATCGCCCCATACCTCATGCAAGCCGGGACACTTGTGTGGACACATAAGCGACCAATCTTC 1496 Query 79929 ATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCT 79988 || | | | || ||||||||||| ||||| |||||||| | || ||||| |||||| Sbjct 1495 ATTAGCTTCAACACGTTTCATAAAAAGATCTGGAATCCATAATGCATAAAATAAATCTCT 1436 Query 79989 GGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGA 80048 | ||||||||| || | || ||||| || || | ||| | || | | ||||| | Sbjct 1435 AGCTCTATGCTCTTCTGTGCCAGTATTTTTCTTTAAATCCAAAAATTCAAATATATCTGC 1376 Query 80049 ATGCCACGGTTC 80060 |||||| ||||| Sbjct 1375 ATGCCATGGTTC 1364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717020394955440