Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq119770 111 1e-19 seq138766 93.3 3e-14 seq123102 93.3 3e-14 >seq119770 Length=1537 Score = 111 bits (122), Expect = 1e-19 Identities = 143/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | |||||| ||||| | |||||| | || || |||||||| ||||| ||| Sbjct 902 TCTTTTTGAATATTGTAGTCGGATAGAGTACGTCCATCTTCTAATTGTTTTCCGGCGAAA 961 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCT 43037 || | || |||||||| | || | ||||||||| || |||| || ||||||| | Sbjct 962 ATAAGACGTTGTTGATCTGGTGGAATACCTTCTTTATC-CTGAATCTTAGCTTTGACATT 1020 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| ||||| | ||| || |||| || || || || || ||||| ||||| || Sbjct 1021 TTCAATGGTGTCAGATGGCTCCACCTCTAAGGTGATGGTCTTGCCAGTTAGTGTTTTGAC 1080 Query 43098 AAAAATTTGCATTTT 43112 |||||||||||||| Sbjct 1081 GAAAATTTGCATTTT 1095 >seq138766 Length=1258 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || || | || | |||||| || ||| || || | |||||||||||| Sbjct 866 CCTCCACGAAGCCTCAGAACAAGATGGATTGTAGACTCTTTCTGTATATTGTAATCGGAA 807 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | | | || || | || || || ||||| |||| || ||| ||||| | || Sbjct 806 AGTGTTCTTCCATCCTCAAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCTGGTGGA 747 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || ||||| || ||| || | ||||| | |||| | ||| | ||| || Sbjct 746 ATCCCCTCTTTATC-CTGTATTTTGGCCTTGACATTCTCAACATTTTCGGATGGCTCCAC 688 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTT 43111 || | ||||| |||||||| ||||| ||||| || || |||||||||| Sbjct 687 CTCCAGTGTTATTGTTTTTCCCGTTAGTGTTTTTACGAAGATTTGCATTT 638 >seq123102 Length=1410 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | ||| || ||||| | || ||||| || | ||| ||||||||| Sbjct 818 CCTCCACGAAGGCGTAATACTAAATGCAATGTAGATTCCTTCTGAATATTATAATCGGAC 877 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||||| ||| | || || || |||||||| || |||||||| || |||||||| | || Sbjct 878 AATGTGCGTCCATCCTCTAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGG 937 Query 43003 ACACCTTCTTTTTC 43016 | |||||||| || Sbjct 938 ATTCCTTCTTTATC 951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380723322256668