Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq43985 253 3e-62 >seq43985 Length=4878 Score = 253 bits (280), Expect = 3e-62 Identities = 533/784 (68%), Gaps = 23/784 (3%) Strand=Plus/Minus Query 71373 TGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAA 71432 ||| ||| |||| || || || | || | |||||| || | |||||| || || ||||| Sbjct 2137 TGAGCCTTCATAAGTTTCATAAGTACCATATTTTTCAGCCAATTCACAGCTAGCTTCTAA 2078 Query 71433 TGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGA-GATCTTGTGCTTCCGGGCTAT 71491 ||| ||||| || || ||||| ||||| | | ||| | || | || | | ||| | Sbjct 2077 TGCGCCATAGTACATAGTTTCAAAAATTTGTTGATTTAAGAGCGCA-GCCTGCTCGCTCT 2019 Query 71492 CAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAG 71551 | |||| ||| | || || || |||||||| || ||||| | |||||| || |||| Sbjct 2018 CGTATGGGTAACGCATAAGGATTAAAGCGTCTGCAAAACCTTGTATGCCAATGCCAATAG 1959 Query 71552 GTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAA 71611 | | ||||| |||||| | | || || || | ||||||| ||| || || || | Sbjct 1958 GGCGATGTCTGAAATTAGACTTCTTTGCCTCGGGCAATGGATAATGATTTATGTCGATGA 1899 Query 71612 TTTTATTGAGATTTC---TGACTATTACTTTGACCACATCCTTTA---GTTTGAGAAAAT 71665 ||||||| ||||| | | || | | | | ||| ||||| | | || ||||| Sbjct 1898 TTTTATTTAGATTACGTGTTACAGTCATTGTAACC---TCCTTCAAACGCTT---AAAAT 1845 Query 71666 CAAATCTCCCATCTATT---ACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGG 71722 | | | ||| | ||||||| || | |||| ||||| | ||||||||| | Sbjct 1844 CGTACGTTTTTTCTGGTGTAACAAACATATTGAGTGCAATCGATGCTAAATTACAAACAG 1785 Query 71723 CTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGG 71782 | || |||| | | | ||| | | ||||| || || | ||||||||| || || | Sbjct 1784 CCACTTCATCTGGTGCTGAATACTCAACTATTTCTGTACATAAATTACTACATTTAATAG 1725 Query 71783 TTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAG 71842 | || | ||||||||||||||||||| | ||||| |||||||| || || ||| | || | Sbjct 1724 TGCCAATATTTTGTTGATTACTCTTTCTATTACATGCATCCTTGTACAGCATATATGGTG 1665 Query 71843 TACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGAC-TCGAGCCTTTATTATA 71901 | || || || | || ||||| ||||| || ||| | ||| | | || |||| | | Sbjct 1664 TGCCTGTCTCTACTTGCGATTCAATAATGGCAAACCA-AAGACTTTGTGCTTTTACTTTC 1606 Query 71902 TTCTTGTATCTCTTTTCTCTT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCC 71959 || | || | | | |||| || |||| ||||||||| ||| || || || |||| Sbjct 1605 TTAT--TAGCGCGTCCGTCTTGCTCATATTTAGTATATAATTTTTCAAATTCATCGCCCC 1548 Query 71960 AAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCAT 72019 | | | | || || ||||| | | |||||||| | ||||| ||| ||| | | | Sbjct 1547 ATACCTCATGCAAGCCGGGACACTTGTGTGGACACATAAGCGACCAATCTTCATTAGCTT 1488 Query 72020 TTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTAT 72079 || ||||||||||| ||||| |||||||| | || ||||| |||||| | ||||| Sbjct 1487 CAACACGTTTCATAAAAAGATCTGGAATCCATAATGCATAAAATAAATCTCTAGCTCTAT 1428 Query 72080 GCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 72139 |||| || | || ||||| || || | ||| | || | | ||||| | |||||| | Sbjct 1427 GCTCTTCTGTGCCAGTATTTTTCTTTAAATCCAAAAATTCAAATATATCTGCATGCCATG 1368 Query 72140 GTTC 72143 |||| Sbjct 1367 GTTC 1364 Score = 147 bits (162), Expect = 3e-30 Identities = 262/380 (69%), Gaps = 3/380 (1%) Strand=Plus/Minus Query 70876 TAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGAC 70935 |||||||| ||| || || ||| ||| | || || |||| |||||||| | ||| Sbjct 2681 TAAAAATGTATAGATGTAAGCTTGCCATAATTTGGTTCAGCTACATGAATATTAAACGAT 2622 Query 70936 TGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGA 70995 ||||||||||||||||| || || | || || ||||| || || | ||||| | Sbjct 2621 TGACTTTGATCGATGAATGCGCCACGATCGGCTGCCATCTTCATTGTAGTCTTCACCGAT 2562 Query 70996 ATTTCCCAAATAGTTTTATAAACT-CGCTTAATATCTTCTGGAAGGTTTGTATTC--TGA 71052 || ||||||| ||||| |||| | | | || | | | | | || || || | || Sbjct 2561 ATCTCCCAAACTGTTTTGTAAAGTTCACGTATTTTTGTTGGTATGGATTCAATACCTTGT 2502 Query 71053 ATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCG 71112 || || |||| || ||||| || ||| || ||||||| ||| || || Sbjct 2501 ATTGAACCACGGCTTGTTATAATTTTAGATTTCATATCTTCATCCCACAAACCCAATTCA 2442 Query 71113 GTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGA 71172 || | | | | | | |||| ||||||| ||||||||||| || || | ||| | ||| Sbjct 2441 GTGAGATCGCGTAACAAATGATGATTAACAACTTGAAATTCACCCGAAAGTACGCGTCGA 2382 Query 71173 GTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTT 71232 | |||||||| || || ||||| | || |||||||| |||| |||||| |||||| Sbjct 2381 TTATAAATATTTGAAGTGTAGGGTTCAAACGATTCATTATTGCCCATAATTTGTGCAGTT 2322 Query 71233 GATGCAGTCGGCATAGGTGC 71252 |||||||| |||||||| || Sbjct 2321 GATGCAGTGGGCATAGGGGC 2302 Score = 91.5 bits (100), Expect = 2e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 72436 GTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGAT 72495 || || || || || ||||| | ||| || || | |||||| || |||||| | | Sbjct 1042 GTTGGTGACGCATGTGTAAAATAACGTTCTGAGAGCAAATTGTATGTTTCAATAACAGCA 983 Query 72496 TCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCA 72555 || |||||| | ||||| || | | || ||||||||||||||||| || | ||| Sbjct 982 TCAATATCCTCTCCGTGTATACCAATGGATACGCGCATTAACATATGCTGTGGACGCTCA 923 Query 72556 ACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 72615 || || || ||| | ||| | || || || ||||| ||||||||||||||||| Sbjct 922 ACAATTTTACCATTCAGTTTAAGTAAATAAGAACGTTCCAGCGTTTTAAAACCAAAATAA 863 Query 72616 TTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATT 72653 || || ||| || || || || || ||| | ||||| Sbjct 862 TTATAACCAAAATCACGATCATAGATTATAGCTGAATT 825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 669972709734960