Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_004313.1 Length=40149 Score E Sequences producing significant alignments: (Bits) Value seq139046 262 1e-65 seq104767 163 7e-36 seq28727 118 3e-22 >seq139046 Length=22897 Score = 262 bits (290), Expect = 1e-65 Identities = 959/1475 (65%), Gaps = 45/1475 (3%) Strand=Plus/Minus Query 708 CTTCCACATACAAAAGGTGAATGGGCGTTCAAACGTATGCTGATTACCCTGGAACCGTGG 767 || || || ||||||||||||||||| || | ||| ||| | || ||||||||| Sbjct 22410 CTCCCTCACACAAAAGGTGAATGGGCTGCGAAGGGGATGAAGATCAAGCTCGAACCGTGG 22351 Query 768 CAACTTTTCATCGTGTGCTGTGCCTTT--GGCTGGGTACAGAAGGGAACAAAGCT-TCGT 824 || |||| || || | ||| || ||| | | || || || ||| |||| Sbjct 22350 CAGTCTTTCG--GTTTGGGGATGATTTACGGGTGGTTGCGCAAAGGGTCAG-GCTATCGT 22294 Query 825 CGTTTTCGTGAGGTCTACACAGAGATACCACGTAAGAACGGGAAATCGGCTATTTCAGCT 884 ||||||||||||| || || | || ||||| ||||| || || | | | | || Sbjct 22293 CGTTTTCGTGAGGCGTATTTCGAAGTTCCCCGTAAAAACGGTAAGTCTGTTCTGGCCGCC 22234 Query 885 GGTGTAG-CTCTCTACTGTT--TCACCTGTGATAACGAATTCGGTGCGGAAGTATACTCC 941 || ||| | | |||| || || ||| ||| ||||| || ||||||||||| Sbjct 22233 GGGATAGGCGTTGCGATGTTCGTCGCC---GATCGCGAGTTCGGCGCCGAAGTATACTCA 22177 Query 942 GGCGCCACGACTGAAAAACAGGCGTGGGAGGTATTTCGTCCCGCGCGTCTGATGTGTAAG 1001 ||||| ||||| | ||||||||| |||||| || || || || | | ||| || Sbjct 22176 GGCGCAACGACACAGAAACAGGCGATGGAGGTTTTCCGCCCGGCCAGAATCATGATACAG 22117 Query 1002 CGCACACCACTACTGGTGGAGGCATTCGGTATAGAGGTGAATGCCTCAAACCTGAACCGT 1061 | ||| |||| | || ||||| ||||||||||| ||||| | |||| Sbjct 22116 AAAAGCCCAGAACTGCAACAAGCCGCAGGTATTCAGGTGAATGCC-CAAACTTTGGCCGT 22058 Query 1062 CCGGAGGA-TGGTGCCCGCTTCGAGCCGTTGATCGGCAACCCCGGGGACGGGGCATCACC 1120 || | | ||| |||| || || ||| | | ||| | ||||| || || ||| || Sbjct 22057 CCCCGGCAATGGCTCCCGGTTTGAACCGGTCGTAGGCGATCCCGGAGATGGTGCAAGCCC 21998 Query 1121 GCACTGCGCAATAGTTGACGAATACCACGAACACCCTACGGATGCGCTCTACACAACAAT 1180 |||||| || | || |||| |||||||||| || || || || || || Sbjct 21997 CTCCTGCGCGATTATCGATGAATTTCACGAACACCAGACCTCAGCACTGTATGACACTAT 21938 Query 1181 GCTTACAGGTATGGGCGCGCGCCGACAGCCGCTGATGTGGGCAATAACCACGGCGGGCTA 1240 ||| || ||||||||||| ||||| |||||| | | | || || ||||| || || Sbjct 21937 GCTCACCGGTATGGGCGCCCGCCGGCAGCCGTTACTATTCATCATCACGACGGCAGGGTA 21878 Query 1241 CAACATCGAGGGGCCGTGTTACGACAAGCGACGCGAAGTGATTGAGATGCT-GAACGGAT 1299 | | || || ||||| ||| |||||| ||| | || ||||| || | || Sbjct 21877 CCTGCTTGACGGCCCGTGCTACACCAAGCGTAAAGAATGCCTAGAAATGCTCGACCAGA- 21819 Query 1300 CGGTGCCGAACAACGAACTTTTTGGCGTGATTTACACGGTTGATGAAGGGGATGACTGGA 1359 | ||||| | | || ||||||| | |||| | ||||| | |||||| |||| Sbjct 21818 CTGTGCCAGATGAGGAGCTTTTTGCCTATATTTGGGACTTGGATGAGGAGGATGATTGGA 21759 Query 1360 CAGATCCAA--AAGTGCTGGAGAAAGCAAACCCGAACATTGGGGTGTCAGTATACCGTGA 1417 ||||||| || | ||| |||||||||||||| | || ||||| |||| ||| || Sbjct 21758 CAGATCCGGCGAATT--TGGCTAAAGCAAACCCGAATCTCGGCGTGTCCGTATTCCGAGA 21701 Query 1418 CTTCCTTCTCAGTCAGCAACAGCGTGCTATTAACAATGCCCGCCATGCGGGTGTGTTCAA 1477 || ||| || |||| ||| | || | | | || || |||||| Sbjct 21700 TTTTCTTGAGAGCCAGCTCGCTAAGGCTGTAAATCAGCCAAGATTCGCCGGAACGTTCAA 21641 Query 1478 AACGAAGCATCTCAATGTATGGGTTGCCGCCCGCACAGCATTCTTT---AATCTGGTTTC 1534 ||| |||||| | || ||| ||||| | |||| |||| || ||||| Sbjct 21640 AACAAAGCATTTGAACCAGTGGA---CCGCCTCAAAAGCAGGCTTTTTCAACATGGTTAA 21584 Query 1535 CTGGCAAAACTGTGAGGATAAGACGCTGACGCTGGAACTGTTTGAGGGTCAACCCTGCGT 1594 |||| | || || || ||||| ||||||||| | || | || | || |||| | Sbjct 21583 CTGGAATAAGTGCGAAGATAAAACGCTGACGTTAGACCAATTCTACGG-CAACGAAGTTA 21525 Query 1595 ACT--GGCGTTCGATCTGGCTCGTAAGCTGGACATGAACAGCATGGCGAGGTTATTTACC 1652 | | ||| || || | || |||||||| ||| ||||||||||||| || | || Sbjct 21524 ATTTAGGCCTT-GACTTAGCGCGTAAGCTAGACCTGAACAGCATGGCACGGCTGTTCTGG 21466 Query 1653 CGTGAAATAGACGGGAAAACGCATTTTTACAGCGTGGCGCCACGTTTCTGGGTGCCGTAT 1712 || || || ||||| ||| |||| || | | |||| || ||||||| ||||||| Sbjct 21465 CGCGATATCGACGGTAAACGCCATTACTATTCCATATCGCCGCGGTTCTGGGCGCCGTAT 21406 Query 1713 GACACGGTCTACAGTGTTGAGAAAAATGAGGATCGCCGTACTGCGGAACGTTTTCAGAAA 1772 |||||| | ||| ||| || || || |||| || || || |||||| Sbjct 21405 GACACGATATACGATGTGGATAATAAG---------CGTATGGCTGAGCGCCTTCAGACT 21355 Query 1773 TGGGTTGAAATGGGCTTTTT-GACAGTAACTGATGGTGCGGAGGTGGATTACCGCTACAT 1831 ||| ||| | || | | | || || | | || || || || || || || || || Sbjct 21354 TGGCTTGCAGGTGGATATCTCGAGAGCA-CAGACGGCGCTGAAGTTGACTATCGGGCTAT 21296 Query 1832 CCTTGAAGAGGCCAAAGCTGCGAACAAACTGAACCCGGTCAGCGAATCCCCC-ATTGATC 1890 || | | ||| | | ||| | ||||| || ||| || | | || || | Sbjct 21295 TCTGGCCGCTGCCGTGGAGACTAACGAGGCCAACCCAGTG-GCGCATGCAGCGATAGACC 21237 Query 1891 CATTTGGTGCCACCGGGCTTTCACATGATCTAGCTGATGAAAACCTGAATCCCGTCACTA 1950 | || || |||| ||| || | || | ||| || | | | || ||||||| Sbjct 21236 CTAGCGGAGCTACCGCGCTGAGCCACGGGCTGGATGACGAGGGCTTAACGCCAGTCACTA 21177 Query 1951 TCATCCAGAA-TTACACCAACATGTCCGATCCGATGAAAGAACTGGAAGCGGCGATTGAA 2009 |||| || || || || | | ||||| || || ||||| ||||| ||||| || || ||| Sbjct 21176 TCATTCAAAACTTTCAGC-ATATGTCAGACCCAATGAAGGAACTCGAAGCAGCAATAGAA 21118 Query 2010 TCGGGTCGCTTTCATCATGACGGCAATCCCATCATGACCTGGTGTATCGGCAACGTGGTC 2069 | ||||| || ||||| ||||| || || |||||||| | |||||| |||| ||| || Sbjct 21117 GCCGGTCGATTCCATCACGACGGAAACCCGATCATGACATTCTGTATCAGCAATGTGATC 21058 Query 2070 GGCAAAACCATTCCGGGTAACGATGACGTGGTGAAGCCTATTAAGGAGCAGGCGGAAAAT 2129 || ||| | |||||||||| || || || || | ||| | |||||| ||| || || Sbjct 21057 GGTAAATACCTTCCGGGTAATGACGATGTCGTCAGGCCAGTGAAGGAGTCGGCCGACAAC 20998 Query 2130 AAAATCGATGGTGCAGTTGCACTGATTATGGCGGT 2164 ||||| || ||||| || ||| |||| ||||| || Sbjct 20997 AAAATAGACGGTGCCGTCGCATTGATAATGGCTGT 20963 >seq104767 Length=4578 Score = 163 bits (180), Expect = 7e-36 Identities = 200/273 (73%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 38738 GACGGACGCTACAACTTAAACGATCTTCATGCAGCAGCAGTTGCAAATGGCGAGGCAACT 38797 || || ||||| ||| | || || ||||| ||||| || || || || ||||| ||| Sbjct 4353 GAAGGGCGCTATAACCTGAATGACCTTCACGCAGCTGCCGTAATCAAAGGTGAGGCTACT 4294 Query 38798 GAATCTCAACGCCCCAGTAATTTTCTGAGGAGTGCACAGATTAAACGGTTCATTTCAGCA 38857 || ||| | |||||| | || | || || || ||| |||| || ||| || ||| Sbjct 4293 GAGCAGCAAAGGCCCAGTCAGTTCTTAAGAAGCGCTCAGGTTAAGCGCTTCCTTAAAGCC 4234 Query 38858 CTAAAAGCCAAAGCTCAAAAAAGAGCTTTGAAAGAAATTCAACCACTTAAAGTAATAAAG 38917 || ||| |||||| | |||||| || || || |||||||||||||||| || || | Sbjct 4233 CTGAAATCCAAAGTGCTAAAAAGCACTCTGGAACAAATTCAACCACTTAACGTGATTAGA 4174 Query 38918 GGTGGGGTTGATTCTGGTGTGTGGGGTGTTGAACTACTGGCAATCAGATATGCAGCATGG 38977 ||||| | | || |||| || ||||||||||| | || || ||||| |||||||||||| Sbjct 4173 GGTGGCGATAATCCTGGCGTTTGGGGTGTTGAGTTGCTAGCTATCAGGTATGCAGCATGG 4114 Query 38978 ATTAAGCCGGAATTTGAAATCGAAGTTTATGAA 39010 ||||| || | ||||||||| || |||||| Sbjct 4113 ATTAATCCAGTATTTGAAATAAGCGTGTATGAA 4081 >seq28727 Length=1947 Score = 118 bits (130), Expect = 3e-22 Identities = 125/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 26899 GCCTTTAATACTGAACAGTTGACCCTGATCTTCCTGCAGTATGGTGAGCTTTCCGCCCTT 26958 |||||| || |||||| || ||||| |||||||||| ||||||||||| ||||| || Sbjct 981 GCCTTTGATGGTGAACAACTGGCCCTGGTCTTCCTGCATGATGGTGAGCTTGCCGCCTTT 1040 Query 26959 GTTAACCCACATTGGGGTTTCTGTTGTGTCCTCTTCTGACGCTTTACCGCGCGGCGTCGG 27018 | || |||| || ||||| || |||||||||||| | |||||||||||| || || Sbjct 1041 GCCCACGTACATAGGTGTTTCGGTAAGGTCCTCTTCTGAGGTTTTACCGCGCGGAGTAGG 1100 Query 27019 AGTGCTGTACTGCAGCTTGTGTTTAATTTTGACGCGCTTCTCTTC 27063 | | | ||| ||||||||| | | |||||||||||||| Sbjct 1101 GGCGGAGAACTTCAGCTTGTGAGACAGCATCACGCGCTTCTCTTC 1145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128143263583972