Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq119770 123 2e-23 seq88566 120 2e-22 seq123102 105 5e-18 seq21876 91.5 1e-13 >seq119770 Length=1537 Score = 123 bits (136), Expect = 2e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || |||||||| || ||||| ||| |||| | | | |||||||||||| Sbjct 890 TGAAGTGTTGATTCTTTTTGAATATTGTAGTCGGATAGAGTACGTCCATCTTCTAATTGT 949 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || || ||| | || | ||||||||| || |||||| |||||||| || ||| || Sbjct 950 TTTCCGGCGAAAATAAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCCTGAATCTTA 1009 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || ||| |||| ||||| || || || |||||||| ||||| || || || Sbjct 1010 GCT-TTGACATTTTCAATGGTGTCAGATGGCTCCACCTCTAAGGTGATGGTCTTGCCAGT 1068 Query 15340 CAGAGTTTTTACAAAAATTTGCATATT 15366 || ||||| || ||||||||||| || Sbjct 1069 TAGTGTTTTGACGAAAATTTGCATTTT 1095 >seq88566 Length=1870 Score = 120 bits (132), Expect = 2e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || |||||||| | || || || ||||| ||||| ||||| | | | ||| ||||| Sbjct 245 AATACTAAATGCAACGTAGATTCCTTTTGAATGTTATAATCACCCAAAGTTCGTCCGTCT 304 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | ||||||||||| | || |||||||| || || |||||||||||| || || Sbjct 305 TCCAGCTGTTTGCCAGCAAAAATTAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATCT 364 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||| ||| || ||| ||| || |||||| | ||| || || | || |||||| Sbjct 365 TGAATCTTGGCTTTGACATGTTCAATAGTATCGGAAGGTTCAACCTCAAGTGTGATGGTT 424 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAA 15370 ||||| || || ||||| || || |||||||| | |||| Sbjct 425 TTACCCGTAAGGGTTTTAACGAATATTTGCATTTCTGAA 463 >seq123102 Length=1410 Score = 105 bits (116), Expect = 5e-18 Identities = 152/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || ||||| || || || ||||| |||||||||||| || | | | || || Sbjct 607 AACCAAGTGAAGTGTTGATTCCTTTTGAATGTTGTAATCGGATAATGTGCGTCCATCCTC 666 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC-AC 15272 | || ||||| ||| | || |||||||||||||| ||||| ||||| || || Sbjct 667 AAGCTGCTTGCCGGCGAAAATTAAACGTTGTTGGTCTGGGGGAATGCCTTCCTTATCTTG 726 Query 15273 AAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 || ||||||| || || | || |||||||| | ||| || || || || || |||| Sbjct 727 AATTTTTGCT-TTAACGTTCTCGATGGTATCCGAAGGTTCAACTTCCAATGTGATAGTTT 785 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || |||| ||||| ||||| ||||||||| Sbjct 786 TGCCAGTCAATGTTTTAACAAATATTTGCATA 817 Score = 104 bits (114), Expect = 2e-17 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CG 15208 ||| |||||||| | || || || || || || || |||||| | ||| || | Sbjct 832 TAATACTAAATGCAATGTAGATTCCTTCTGAATATTATAATCGG--ACAATGTGCGTCCA 889 Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 || ||||| |||||||||||| | |||||||||||||| || ||| ||||||||||| Sbjct 890 TCCTCTAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTTA 949 Query 15269 TCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || |||||| ||| || ||| |||| |||||||| | || || || || || || Sbjct 950 TCTTGAATTTTAGCT-TTAACATTTTCAATGGTATCAGAAGGCTCAACCTCCAAAGTGAT 1008 Query 15328 GGTTTTACCTGTCA 15341 |||||| || |||| Sbjct 1009 GGTTTTTCCCGTCA 1022 >seq21876 Length=2391 Score = 91.5 bits (100), Expect = 1e-13 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 15207 CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTT 15266 |||| || | ||| ||||||||| | || ||||||||||| || ||||| ||||| | Sbjct 896 CGTCCTCCAGTTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGAATACCTTCCT 837 Query 15267 TGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTA 15325 |||| ||| || ||| || || | || || || ||| || || ||||| || Sbjct 836 TGTCCTGAATCTTAGCT-TTGACGTTCTCAATAGTGTCGGATGGCTCGACTTCTAAAGTG 778 Query 15326 ATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| ||||||| ||||||||| || ||||||||| Sbjct 777 ATAGTTTTCCCTGTCAAAGTTTTTACGAAGATTTGCATA 739 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || |||||||| || || || || || |||||||||||| | | | | ||||| Sbjct 720 ACCAAATGAAGCGTTGATTCCTTCTGAATGTTGTAATCGGACAAGGTACGGCCATCTTCC 661 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| ||||| ||| | || ||||| || || || |||||||| || ||||| Sbjct 660 AATTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGG 601 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| || |||| ||||| || || || || | ||| || || || Sbjct 600 ATCTTAGCCTTAACGTTTTCGATGGTGTCAGACGGCTCAACTTCCAGGGTGATAGTCTTG 541 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| ||||||||| || ||||||||| Sbjct 540 CCAGTCAAAGTTTTTACGAAGATTTGCATA 511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361565442752286