Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq138766 95.1 1e-14 seq88566 95.1 1e-14 >seq138766 Length=1258 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 18812 TTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCC 18871 || ||||| || | ||| | || | || | |||||||| || || ||||||||||| Sbjct 869 TTACCTCCACGAAGCCTCAGAACAAGATGGATTGTAGACTCTTTCTGTATATTGTAATCG 810 Query 18872 GCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACG 18931 | | |||| | | ||||| ||||| ||||| ||| | || |||||||||||||| Sbjct 809 GAAAGTGTTCTTCCATCCTCAAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCTGGT 750 Query 18932 GGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCC 18991 || | |||||||| || ||||| || || | | ||| | ||| |||||| Sbjct 749 GGAATCCCCTCTTTATCCTGTATTTTGGCCTTGACATTCTCAACATTTTCGGATGGCTCC 690 Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTT 19043 || | || || ||||| || |||| ||||| || || |||||||||| Sbjct 689 ACCTCCAGTGTTATTGTTTTTCCCGTTAGTGTTTTTACGAAGATTTGCATTT 638 >seq88566 Length=1870 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 ||||||||||| ||||||||||| || ||||| ||| ||| |||| ||||||||| Sbjct 254 TGCAACGTAGATTCCTTTTGAATGTTATAATCACCCAAAGTTCGTCCGTCTTCCAGCTGT 313 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || ||| |||| | | |||||||| || | || || || || ||| || Sbjct 314 TTGCCAGCAAAAATTAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATCTTGAATCTTG 373 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 ||| || || | | ||||||| ||| || || | || ||||||||||| || Sbjct 374 GCTTTGACATGTTCAATAGTATCGGAAGGTTCAACCTCAAGTGTGATGGTTTTACCCGTA 433 Query 19019 AAAGTTTTGACAAAAATTTGCATTT 19043 | ||||| || || |||||||||| Sbjct 434 AGGGTTTTAACGAATATTTGCATTT 458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413870255346124