Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_004928.1 Length=167560 Score E Sequences producing significant alignments: (Bits) Value seq14905 145 8e-30 seq2788 131 2e-25 seq2551 98.7 1e-15 >seq14905 Length=119551 Score = 145 bits (160), Expect = 8e-30 Identities = 142/183 (78%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 62063 TTATAGACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 62122 ||| || |||| ||| || ||||||| ||| ||||| ||||||||||||| |||| || Sbjct 42459 TTACAGGCTCTGAGTGAAAGTACGAGTGATCACGTCCTGCTGCTGTTCCGGCGTCAACGA 42400 Query 62123 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 62182 |||||| || || || || || || |||||||| |||| ||| ||||| || || ||||| Sbjct 42399 GTTAAAACGCACGGCGTACCCCGAGACACGGATAGTCAACTGAGGATACTTCTCAGGATG 42340 Query 62183 CTTAACTGCATCTTCCAGAGTTTCGCGACGCAGAATGTTAACGTTCAGGTGTTGACCACC 62242 || | |||||||| || || || ||||||| | ||||||||| || || || || || Sbjct 42339 TTTTATCGCATCTTCGAGCGTCTCACGACGCATGACGTTAACGTTAAGATGCTGCCCCCC 42280 Query 62243 TTC 62245 ||| Sbjct 42279 TTC 42277 >seq2788 Length=136445 Score = 131 bits (144), Expect = 2e-25 Identities = 298/441 (68%), Gaps = 8/441 (2%) Strand=Plus/Plus Query 142183 TTAATCTGAATTCCGTAGTCCATATGTCGAATACGGTTTTCATCCACGCCTTTGTTATTT 142242 || ||||| | ||||||||||| || |||| ||||| | || || || ||| ||| Sbjct 19274 TTGATCTGCACGCCGTAGTCCATGTGACGAACGCGGTTGCCTTCAACACCACGGTTGTTT 19333 Query 142243 TTCAGAACTAATAGGTTCTCTACTTCTAAGTGCCACATTGGATAATACGCTGTAGCAGCA 142302 |||||||| | ||| | || ||||| | ||||||||| || || || || |||||| Sbjct 19334 TTCAGAACCAGCAGGCTTTCAACTTCCAGGTGCCACATCGGGTAGAACAGGGTCGCAGCA 19393 Query 142303 CCACCACGAATACCACCTTGAGAACAAGATTTTACTGCAGTTTGGAAATGTTTCCAGAAT 142362 || || || | || || ||||| || ||||| || || || ||||| || || |||| Sbjct 19394 CCGCCGCGCACGCCGCCCTGAGAGCAGGATTTAACCGCCGTCTGGAAGTGCTTATAGAAC 19453 Query 142363 GGAATAACACCCGTATGTCGAA--CTTCACCCATACCGATCTTAGAACCTTCTGCACGAA 142420 || ||| || ||||| ||| ||||||| | ||| ||| ||||| | Sbjct 19454 GGGATACAGCCGGTATG--GAATGCTTCACCGCCGCGAATCGGGCTACCCAGCGCACGGA 19511 Query 142421 GCATACCAACGTTGATACCGATACCAGCTCGTTTAGAAATATATTCAATAATTGATGCT- 142479 ||| ||||||| |||||||| || || | |||| |||| | | || ||| Sbjct 19512 TGCGGCCAGCGTTGATGCCGATACCTGCGCGCTGTGAAACGTATTTCACGA-TGGCGCTG 19570 Query 142480 GAAGTTTTGTTAATAGATTTTAACGAATCACCGGCTTCAATAACTACACAACTAGAGAAC 142539 || || ||| || || | | || ||| || || | ||| ||| |||| Sbjct 19571 GAGGTCGCGTTGATGGAGTCCAGGCTGTCGCCGCACTCGATCAGTACGCAAGAGCTGAAC 19630 Query 142540 TGGCGAGTTGGAGTACGAGCACCTGCCATAATTGGGGTTGGCAATGAAA-CTTGATGAGT 142598 |||||||| || || || | || | ||||||||| || |||| |||| ||||| | || Sbjct 19631 TGGCGAGTCGGGGTGCGCACGCCGGACATAATTGGCGTAGGCAGAGAAATCTTGAAG-GT 19689 Query 142599 AGAAACGGCATCATAAAAACG 142619 ||||| |||||||| ||||| Sbjct 19690 TGAAACCGCATCATAGAAACG 19710 >seq2551 Length=53185 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 62075 AGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAAC 62134 |||||||||||| | || ||||| |||||||||| || || ||||| ||||| || Sbjct 37104 AGTAAAGGTACGGGTAATCACGTCCTGCTGCTGTTCTTTGGTTAGTGAGTTGAAGCGTAC 37045 Query 62135 TGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATC 62194 ||||| || || || ||||| |||||||| || |||| || |||| | | || || Sbjct 37044 CGCATAGCCTGAAACGCGGATAGTCAGCTGAGGGAATTTCTCAGGATTTTCCATGGCCTC 36985 Query 62195 TTCCAGAGTTTCGCGACGCAGAATGTTAACGTTCAGGTGTTGACCACCTTCAAT 62248 ||| | ||||| || | |||||||||||| || ||||| ||||| || Sbjct 36984 CAGCAGCATCTCGCGGTTCATTACGTTAACGTTCAGATGCTGACCGCCTTCGAT 36931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535132280563200