Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_005066.1 Length=164018 Score E Sequences producing significant alignments: (Bits) Value seq2551 123 3e-23 seq38357 93.3 4e-14 >seq2551 Length=53185 Score = 123 bits (136), Expect = 3e-23 Identities = 137/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 53619 TTAGAGAGATTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACT 53678 ||| || | || ||||||||||| | || ||||| ||||||| ||| || || Sbjct 37116 TTACAGCGTTTTAGTAAAGGTACGGGTAATCACGTCCTGCTGCTGTTCTTTGGTTAGTGA 37057 Query 53679 ATTGAAGCGCACCGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATG 53738 |||||||| ||||| || || |||||||| || || ||||| ||| | |||||||||| Sbjct 37056 GTTGAAGCGTACCGCATAGCCTGAAACGCGGATAGTCAGCTGAGGGAATTTCTCAGGATT 36997 Query 53739 TTCAACAGCGTCCAGCAACATTTCTCGTAACAATACGTTAATATTCAAATGCTGACCACC 53798 ||| | || ||||||| ||| || || || |||||||| |||| ||||||||| || Sbjct 36996 TTCCATGGCCTCCAGCAGCATCTCGCGGTTCATTACGTTAACGTTCAGATGCTGACCGCC 36937 Query 53799 TTC 53801 ||| Sbjct 36936 TTC 36934 >seq38357 Length=36386 Score = 93.3 bits (102), Expect = 4e-14 Identities = 204/306 (67%), Gaps = 0/306 (0%) Strand=Plus/Minus Query 35581 ATCAGGGTAAAGACGCTTACTAGAACATTCCAATGCAAGTTGCTTAATGTCGTAGTTCGG 35640 ||| || || | |||||| || | |||||| | || || || || ||||| || || | Sbjct 27869 ATCGGGATACATACGCTTGCTGGCACATTCGAGGGCGAGCTGTTTGATGTCATAATTGGC 27810 Query 35641 ATCTTCTGGTTTAAGGTTTAATCCTTCTTCTAAGAACATCACCAGCTTAGGAAACACCGG 35700 || | | ||| | |||| || || | | | ||||| || |||||||| | Sbjct 27809 GTCGGCCGCCTTATGATTTATGCCGTCGCGAATGGCGAAAACCAGTTTGGGAAACACGGC 27750 Query 35701 AGTTATACCATCTTTACCTAAACCTTTAGTTCGAACTTTCAGGATCGCTTTCTGAATCAG 35760 ||| ||| || ||| ||||| || | || ||| |||| ||| |||||||| Sbjct 27749 CGTTTTACGATTTTTTCCTAATCCGGCGATACGGTTGCGCAGAATCGATTTTTGAATCAG 27690 Query 35761 TTTTTCTTCCCAGCTAGTACCCATACCAAAGGTTAAAGTCACAAAAGGCGTTTGACCGTT 35820 ||| ||| | ||||||| ||||||| || |||||||| ||||| || ||||| Sbjct 27689 CCGCGCTTGCCAACAGGTACCCAGACCAAAGCCAAAGGTCACAAACGGCGTCTGGCCGTT 27630 Query 35821 GGTGGAGAACAAAGTGTTGATCTCATATTCCAACGCCTGATATCCGTCTAACGTTTCTTT 35880 || || | | || || | ||||||||||| || |||| | |||| | ||||| Sbjct 27629 GGCGGTGTGAAGCGTATTAACCTCATATTCCAGCGACTGAAAGGCGTCGTAGCACTCTTT 27570 Query 35881 TTCTGT 35886 |||||| Sbjct 27569 TTCTGT 27564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 523817580600480