Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq12640 122 1e-22 seq139042 98.7 1e-15 >seq12640 Length=196862 Score = 122 bits (134), Expect = 1e-22 Identities = 188/267 (70%), Gaps = 6/267 (2%) Strand=Plus/Plus Query 6938 CCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTTC 6997 |||||||| || ||||||||| ||| | |||| | |||| | || ||||| | | Sbjct 67868 CCGTGAGTCAGGTGGCCGCCGTGTGCCAGGTTCATACCCAGAATGGTGTCGCCCGGTTGC 67927 Query 6998 AGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCG 7057 || || || ||| || || ||| || ||||| ||||| |||||||||||||||||| Sbjct 67928 AGCAGCGCGGTGTATACCGCGAAGTTAGCCTGTGAGCCGGAGTGAGGTTGAACGTTTGCG 67987 Query 7058 AAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCT---CGATTTCATCG 7114 | | || ||||| ||||| || || || || ||||| | || |||| ||| || Sbjct 67988 TAGTCAGCACCGAACAGCTCTTTCGCGCGGTCGATAGCCAGTTGCTCAACGATATCAACG 68047 Query 7115 GCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTA 7174 | | ||||||| || || || || ||||||||||| || || || || |||||||| Sbjct 68048 ---TATTCGCAGCCACCGTAGTAGCGCTTGCCCGGATAACCTTCGGCGTATTTGTTGGTC 68104 Query 7175 AAAATAGAACCCTGTGCTTTCATAACA 7201 | || || || || | ||||||| Sbjct 68105 AGCTGTGAGCCTTGAGCCTGCATAACA 68131 >seq139042 Length=12826 Score = 98.7 bits (108), Expect = 1e-15 Identities = 156/221 (71%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 7013 ACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCGAAATTGCAACTAAAC 7072 ||||| || ||||| || ||||| |||||||||||||| ||||| || || || ||| Sbjct 2736 ACTGCTTGATTTGCCTGAGAACCAGAATGAGGTTGAACATTTGCAAATTTAACACCAAAT 2677 Query 7073 AG-TTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGCTTTTACGCAGCCGCC 7131 || || ||| | || || | || ||||| |||||||| | | | || || | Sbjct 2676 AGCTTACAAAGC-CTATCTATAGATAGATTCTCAATTTCATCCACATACTCACAACCACA 2618 Query 7132 ATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAAAATAGAACCCTGTGC 7191 |||||| | || || ||||| || || ||||| || ||||| | || |||||| ||||| Sbjct 2617 ATAATATCTCTTACCAGGATAACCTTCTGCATATTTATTGGTCAGAAAAGAACCTTGTGC 2558 Query 7192 TTTCATAACATCGTCTGACACATAGTTTTCGGACGCAATCA 7232 || ||| || | | | || | ||||| || ||||||| Sbjct 2557 TTCCATCACTGCTTTACTCGCAAAATTTTCTGATGCAATCA 2517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554397937106160