Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_005260.1 Length=233234 Score E Sequences producing significant alignments: (Bits) Value seq2788 219 6e-52 seq38357 105 1e-17 >seq2788 Length=136445 Score = 219 bits (242), Expect = 6e-52 Identities = 322/456 (71%), Gaps = 0/456 (0%) Strand=Plus/Plus Query 43574 GGACTAAAGAGCGTGATATAGTCGTCATTTTTCAGACGCTCGAAAAACAGCTTGTTGATT 43633 || || || || ||||| | | || | || |||||||| | | ||| |||||||| Sbjct 19220 GGGCTGAACAGAGTGATGTCGCCGCCTTTAACCAGACGCTGATACATCAGTTTGTTGATC 19279 Query 43634 TGGATACCGTAGTCAAGCTGGCGAATTCGATTTTCTTCCACGCCCTTGTTGTTTTTCAGA 43693 || | |||||||| | || |||| || || |||| || || ||||||||||||| Sbjct 19280 TGCACGCCGTAGTCCATGTGACGAACGCGGTTGCCTTCAACACCACGGTTGTTTTTCAGA 19339 Query 43694 ACAAGGATTTTTTCAACTTCAAGATGCCACATTGGATAGTAAAGAGTAGCAGCGCCACCG 43753 || || | |||||||||| || |||||||| || ||| | || || ||||| || ||| Sbjct 19340 ACCAGCAGGCTTTCAACTTCCAGGTGCCACATCGGGTAGAACAGGGTCGCAGCACCGCCG 19399 Query 43754 CGTACACCACCCTGTGAGCAACTTTTTACCGCAGTCTGGAAATATTTCCAGAACGGAATA 43813 || || || ||||| ||||| ||| ||||| |||||||| | || ||||||| ||| Sbjct 19400 CGCACGCCGCCCTGAGAGCAGGATTTAACCGCCGTCTGGAAGTGCTTATAGAACGGGATA 19459 Query 43814 ATACCAGTGTGGCGAACTTCACCACTTCGAATGCGAGAACCTTCGGCACGAATAGCGCCA 43873 || || ||| ||||||| | ||||| | ||| ||||| || |||| Sbjct 19460 CAGCCGGTATGGAATGCTTCACCGCCGCGAATCGGGCTACCCAGCGCACGGATGCGGCCA 19519 Query 43874 CCGTTGATACCGATACCAGCGCGTTTGCTAATATAGTCAACGATTGAACTTGCGGTAGCG 43933 ||||||| |||||||| ||||| | || || | ||||| | || | ||| ||| Sbjct 19520 GCGTTGATGCCGATACCTGCGCGCTGTGAAACGTATTTCACGATGGCGCTGGAGGTCGCG 19579 Query 43934 TTAATGCTATCGAGTTCGTCGCCGCTTTCGATCTTCACGCATGAGCTAAACTGGCGAGTC 43993 || ||| || || |||||||| |||||| ||||| ||||| |||||||||||| Sbjct 19580 TTGATGGAGTCCAGGCTGTCGCCGCACTCGATCAGTACGCAAGAGCTGAACTGGCGAGTC 19639 Query 43994 GGGGTTCGAACACCAGCAAGAATTGGCGTCGGTAGA 44029 ||||| || || || | | ||||||||| || ||| Sbjct 19640 GGGGTGCGCACGCCGGACATAATTGGCGTAGGCAGA 19675 Score = 98.7 bits (108), Expect = 1e-15 Identities = 198/289 (69%), Gaps = 10/289 (3%) Strand=Plus/Plus Query 41679 TGATCCACAAACTTCTGCATGATAGCTACAATGTCCAAGTAACCCTTCATGCCGTGTTTG 41738 ||||| |||||||||||||| | | | || | | || |||||| | ||| || Sbjct 18152 TGATCGACAAACTTCTGCATCAGACCGACCAGATGCAGGTAACCGT------CGTTATTA 18205 Query 41739 GTCATCTGCCA-AGCTGTCTCATACTCG-CTACCAAGCATGTCTACCTCAGGCACTAGCT 41796 | ||| | ||| ||| | ||| |||| | || ||| | ||| |||||||| | || Sbjct 18206 GGCATATCCCACAGCAG-CTCGTACTGGTCTTTCAAACGCTCATAC-TCAGGCACAACCT 18263 Query 41797 GATTAAAGACACCATCTTTCGATTGCTTGGTGCTCACTAGGCCGCGCGGTGGCTCGATAC 41856 || | || ||| ||||| || |||| ||||||| ||||||||||||| || |||| Sbjct 18264 GACGCAGGATACCGTCTTTAGACGCCTTGATGCTCACGTGGCCGCGCGGTGGTTCAATAC 18323 Query 41857 CGTTTGTGCTGTTGGTGATCTGTGAACTACTCTCACAAGGCATAAATGCGCTTAGAGTAT 41916 |||| ||| ||| | ||||| ||| | ||| | ||||| | || || || Sbjct 18324 CGTTGGTGGCGTTTGAAATCTGCGAAGAGGTTTCAGACGGCATCAGCGCAGACAGCGTGG 18383 Query 41917 CGTTTCGCAGGCCGTGCTGTTTGATCTCAGCTCGCAGCCATTCCCAATC 41965 ||| ||||||||||||| ||| || || |||||| |||||| || Sbjct 18384 AGTTACGCAGGCCGTGCTCTTTAATGCTGGCGCGCAGCGCTTCCCAGTC 18432 >seq38357 Length=36386 Score = 105 bits (116), Expect = 1e-17 Identities = 211/312 (68%), Gaps = 3/312 (1%) Strand=Plus/Minus Query 38463 GTGACTTGCTACTTGCGCAATAATCTGAGCGACTACGGCAGCAGCGGTAGAAATGCTTTT 38522 ||| || || || || || |||||||| || ||||| | ||||| || ||| || Sbjct 27393 GTGGCTGGCAACCTGAGCGATAATCTGTGCCGTGACGGCGGTCGCGGTGGAGATGGACTT 27334 Query 38523 CGGAGTTTCGATCTGTGCATTTCCCATACGGAACCCGCGATCTAACATGCCTTTGACATC 38582 ||| || ||||| | || || ||||| || || || ||||||||||||| || Sbjct 27333 CGGCGTATCGATTTCCGCGTTGCCCATTTTAAAACCTTTATTCAACATGCCTTTGAGGTC 27274 Query 38583 TATCAACATGCAGTTAAACATTGGGAAGAATGGAGAATAGTCAAGATCATGGAAGTGCAG 38642 || | ||||||||| ||||| ||||| || || || ||||| ||||| || | || | Sbjct 27273 GATGAGCATGCAGTTGAACATCGGGAAAAACGGTGAGTAGTCGAGATCGTGATAATGAAT 27214 Query 38643 CCAGCCTTTTTCGTGTGCTTGCATAACTTCAACAGGAAGATAATGCT---TTGCAAAGTG 38699 ||| ||||| || ||| || ||| ||| ||| ||||| ||| |||| Sbjct 27213 TTCGCCGCGCTCGTGGGCCAGCACCACGTCACGAGGCAGAATATGCTGACGCGCATAGTG 27154 Query 38700 CTTACTAACAATACCAGCAACCAGATCGCGTTGAGTAGGGATTACTTTAGCGTCTTTGTT 38759 || ||||| || || | ||| ||||| || || || || ||||| ||| || || Sbjct 27153 TTTCGCTACAATCCCCGCCAGCAGGTCGCGCTGTGTGGGAATGACTTTGCTGTCCTTATT 27094 Query 38760 AGCATTCTCATT 38771 || || ||||| Sbjct 27093 GGCGTTTTCATT 27082 Score = 102 bits (112), Expect = 1e-16 Identities = 234/346 (68%), Gaps = 5/346 (1%) Strand=Plus/Minus Query 37955 AGAAA-CTGCGGCATCCCATAGGGAACTTAAAGCTGCCAGTTGTTTCAACAACTTTATCA 38013 ||||| |||||||| ||||| ||| ||||| || || | ||| || | ||| Sbjct 27940 AGAAAGCTGCGGCAGCCCATCGGGGTTTTAAACGAACCGGTGACCTTAACCACCTGATCG 27881 Query 38014 TAACTCAGAATATCTGGATACATACGCTTAGAAGCGCACTCCAGTGCCAGTTGCTTGATA 38073 ||| | |||||||| |||||||||||||| || || || || || || || ||||| Sbjct 27880 TAATTAAGAATATCGGGATACATACGCTTGCTGGCACATTCGAGGGCGAGCTGTTTGATG 27821 Query 38074 CGATAAAGCGGGTCAGTTGGCTTCA-AGTTGTGTCCGTCTTTCAGAGCAAACACCAGTTT 38132 |||| | ||| | | ||| | || || ||||| | || || |||||||| Sbjct 27820 TCATAATTGGCGTCGGCCGCCTTATGATTTATG-CCGTCGCGAATGGCGAAAACCAGTTT 27762 Query 38133 CGGGAACACCGGAGTGATACCCTCTTTGCCAAGTCCAGCCAGTCGAACTTTCAAGATCGC 38192 || ||||| | || ||| | ||| || | ||| || | || || |||| Sbjct 27761 GGGAAACACGGCCGTTTTACGATTTTTTCCTAATCCGGCGATACGGTTGCGCAGAATCGA 27702 Query 38193 TTCCTGAATCAGTTCAGCTTCCCAGCTTTCACCCAGACCAAAGCCGAATGT-ACAGAAGG 38251 || |||||||| |||| ||| | ||||||||||||||| || || ||| || | Sbjct 27701 TTTTTGAATCAGCCGCGCTTGCCAACAGGTACCCAGACCAAAGCCAAAGGTCACA-AACG 27643 Query 38252 GAGTTTGACCGTTCGCGGAGTGAAGAGTGTTCACCTCGTATTCGAG 38297 | || || ||||| |||| |||||| || || ||||| ||||| || Sbjct 27642 GCGTCTGGCCGTTGGCGGTGTGAAGCGTATTAACCTCATATTCCAG 27597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744923812283040