Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_005284.1 Length=54865 Score E Sequences producing significant alignments: (Bits) Value seq139046 363 5e-96 >seq139046 Length=22897 Score = 363 bits (402), Expect = 5e-96 Identities = 895/1334 (67%), Gaps = 54/1334 (4%) Strand=Plus/Minus Query 877 GAGGTCCCCAGAAAGAACGGCAAATCGGTGATTGCCGCGGGCGTTGGCATCGGCATGTTC 936 || || ||| | || ||||| || || || | ||||| || | ||| | | |||||| Sbjct 22272 GAAGTTCCCCGTAAAAACGGTAAGTCTGTTCTGGCCGCCGGGATAGGCGTTGCGATGTTC 22213 Query 937 GT-GCTGGACGACGAGTTCGGTGCCGAGGTGTACGCCGGCGCGACGACTGAAAAGCAGGC 995 || || | || ||||||||| ||||| || ||| | ||||| ||||| | || ||||| Sbjct 22212 GTCGCCGATCG-CGAGTTCGGCGCCGAAGTATACTCAGGCGCAACGACACAGAAACAGGC 22154 Query 996 CTGGGAGGTCTTTCGCCCGGCGCGGCTGATGGT---GAAGCGCTCGCCTGAGTTGATCGT 1052 |||||| || |||||||| | | ||| | ||| || || || || Sbjct 22153 GATGGAGGTTTTCCGCCCGGCCAGAATCATGATACAGAAAAGC---CCAGAACTGCAACA 22097 Query 1053 TGCGGCTGACATCGAGGTGAATGCATCGAACAT-GAACAAACCCGAGGACGGCAGTCGCT 1111 || || | || |||||||||| | ||| | | | |||| | ||| || | Sbjct 22096 AGCCGCAGGTATTCAGGTGAATGCC-CAAACTTTGGCCGTCCCCGGCAATGGCTCCCGGT 22038 Query 1112 TCGAGCCGCTGATTGGCAACCCGGGCGACGGCGCGTCGCCATCGTGCTCCATTGTCGATG 1171 | || ||| | | ||| | || || || || || || || ||| | ||| |||||| Sbjct 22037 TTGAACCGGTCGTAGGCGATCCCGGAGATGGTGCAAGCCCCTCCTGCGCGATTATCGATG 21978 Query 1172 AGTACCACGAGCACGATAGCGCCGCACTGTACGAAACGATGCTGACCGGCATGGGCGCGC 1231 | | ||||| ||| | | | | |||||||| || || ||||| ||||| |||||||| | Sbjct 21977 AATTTCACGAACACCAGACCTCAGCACTGTATGACACTATGCTCACCGGTATGGGCGCCC 21918 Query 1232 GCCGGCAGCCGCTCATGTTCATCATCACGACTGC-GGGCGCGAACATCGAGGGGCCGTGC 1290 ||||||||||| | | |||||||||||||| || ||| | | | || || |||||| Sbjct 21917 GCCGGCAGCCGTTACTATTCATCATCACGACGGCAGGGTACCTGCTT-GACGGCCCGTGC 21859 Query 1291 TTCGACAAGCGCCGGCAGGTGATCGAAATGCTCGAAGGGACGGTGCCAGACGACGAGCTT 1350 | | |||||| | | ||||||||||| ||| |||||||| || |||||| Sbjct 21858 TACACCAAGCGTAAAGAATGCCTAGAAATGCTCGACCAGACTGTGCCAGATGAGGAGCTT 21799 Query 1351 TTCGGCTGGATCTGGACGATCGACGAAGGGGACGATTGGACCGATCCGCGCGTGCT-GGC 1409 || | || || ||| | || || | ||| |||||||| |||||| ||| | ||| Sbjct 21798 TTTGCCTATATTTGGGACTTGGATGAGGAGGATGATTGGACAGATCCG-GCGAATTTGGC 21740 Query 1410 GAAAGCCAATCCGAATATCGGAATCTCGGTCTATCAGGACTATCTGGAAAGCCAGCA-GC 1468 ||||| || |||||| |||| | || || | | || | ||| || ||||||| || Sbjct 21739 TAAAGCAAACCCGAATCTCGGCGTGTCCGTATTCCGAGATTTTCTTGAGAGCCAGCTCGC 21680 Query 1469 --AGCGTGCGATTAAGTCTGCGC-GCTTCACGAACACGTTCAAGACGAAGCACTTGAACG 1525 || || ||| || || | ||| | |||||||| || ||||| |||||| Sbjct 21679 TAAGGCTG----TAAATCAGCCAAGATTCGCCGGAACGTTCAAAACAAAGCATTTGAACC 21624 Query 1526 TCTGGACGTCGGCCAAGGCGGGCTATTTCAACCTCGAAGACTGGAAATCATGCGAAGACC 1585 ||||| | | || || |||| ||||||| | | ||||||| |||||||| Sbjct 21623 AGTGGACCGCCTCAAAAGCAGGCTTTTTCAACATGGTTAACTGGAATAAGTGCGAAGATA 21564 Query 1586 GATCGCTGACCCTTGAGCAGTTCGAGGGGCAAGA--TTGCGTGCTCGCGCTCGACATGGC 1643 | ||||||| | || || ||| | || | || || | | | || ||| | || Sbjct 21563 AAACGCTGACGTTAGACCAATTCTACGGCAACGAAGTTAATT--TAGGCCTTGACTTAGC 21506 Query 1644 GCGCAAGCTCGATTTGAACAGTATGGCCCGGCTTTTCTGGCACGACATCGACGGGCGGCG 1703 ||| ||||| || ||||||| ||||| ||||| ||||||| ||| |||||||| || Sbjct 21505 GCGTAAGCTAGACCTGAACAGCATGGCACGGCTGTTCTGGCGCGATATCGACGGTAAACG 21446 Query 1704 GCATTACTTCTGCGTTGCGCCGCGATTCTGGGTGCCCGAAGAAACTGTGCGCAATACCGA 1763 ||||||| | | | ||||||| ||||||| ||| | || || | | || || Sbjct 21445 CCATTACTATTCCATATCGCCGCGGTTCTGGGCGCCGTATGACACGATATACGATGTGGA 21386 Query 1764 AAACCGTCGTATGGCGGAGCGATATCAGGCGTGGGTCAATCAGGGCTGTTTGCTCGAAA- 1822 || |||||||| ||||| |||| | ||| | |||| | | ||||| | Sbjct 21385 TAATAAGCGTATGGCTGAGCGCCTTCAGACTTGGCTTG--CAGGTGGATAT-CTCGAGAG 21329 Query 1823 --CGGATGGCGCGGAGATCGACTATCGCGACATTCT---------CGAGGAGGCGAAGGA 1871 | || ||||| || | |||||||| | ||||| || |||| | || || Sbjct 21328 CACAGACGGCGCTGAAGTTGACTATCGGGCTATTCTGGCCGCTGCCGTGGAGACTAACGA 21269 Query 1872 TGCGAACCGGTTGTGTCCGGTGCAATGCACTCCGCTCGACCCGCACGGCGCAACGAACCT 1931 || |||| || | ||| |||| || | ||||| ||| || || || Sbjct 21268 GGCCAACCCAGTG------GCGCA-TGCAG--CGATAGACCCTAGCGGAGCTACCGCGCT 21218 Query 1932 GTCGCACCAGCTCGAGGACGAAGGGCTGACGCCGGTCACGATCGTGCAGAACTACACGAA 1991 | ||| ||| || ||||| || | ||||| ||||| ||| | || |||| | | Sbjct 21217 GAGCCACGGGCTGGATGACGAGGGCTTAACGCCAGTCACTATCATTCAAAACTTTCAGCA 21158 Query 1992 CATGTCGGACCCAATGAAGGAGCTTGAGGCGGCGATTACGGCGGGCCGATTCCATCACGA 2051 ||||| |||||||||||||| || || || || || || || |||||||||||||| Sbjct 21157 TATGTCAGACCCAATGAAGGAACTCGAAGCAGCAATAGAAGCCGGTCGATTCCATCACGA 21098 Query 2052 CGGCAACCCGATCATGACGTGGTGTGTCAGCAACGTCATCGGCAAGAACCTGCCGGGAAA 2111 ||| |||||||||||||| | ||| ||||||| || ||||| || |||| ||||| || Sbjct 21097 CGGAAACCCGATCATGACATTCTGTATCAGCAATGTGATCGGTAAATACCTTCCGGGTAA 21038 Query 2112 TGACGATGTGGTGCGCCCGATCAAGCAG--GGCAACGACAACAAGATTGACGGTGCTGTC 2169 ||||||||| || | || | ||| || ||| ||||||||| || |||||||| ||| Sbjct 21037 TGACGATGTCGTCAGGCCAGTGAAGGAGTCGGC--CGACAACAAAATAGACGGTGCCGTC 20980 Query 2170 GCACTAATCATGGC 2183 ||| | || ||||| Sbjct 20979 GCATTGATAATGGC 20966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175156707948404