Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq119770 188 2e-42 seq88566 188 2e-42 seq138766 158 3e-33 seq123102 138 3e-27 seq21876 100 7e-16 >seq119770 Length=1537 Score = 188 bits (208), Expect = 2e-42 Identities = 170/214 (79%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| || || | ||| |||||||| |||||||| ||||| |||||||| | || ||||| Sbjct 883 TACCAGGTGAAGTGTTGATTCTTTTTGAATATTGTAGTCGGATAGAGTACGTCCATCTTC 942 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 || ||||||||| || ||||| || | |||||||| || || || |||||||||||||| Sbjct 943 TAATTGTTTTCCGGCGAAAATAAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCCTG 1002 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 |||||| ||||| |||||||| | ||| || || || ||||||| || || ||||| Sbjct 1003 AATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGCTCCACCTCTAAGGTGATGGTCTT 1062 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| |||||||| || || || ||||||||| Sbjct 1063 GCCAGTTAGTGTTTTGACGAAAATTTGCATTTTG 1096 >seq88566 Length=1870 Score = 188 bits (208), Expect = 2e-42 Identities = 179/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || | | ||||| ||| || |||||||| || ||||| ||||| ||| Sbjct 230 CCTCCTCTGAGACGCAATACTAAATGCAACGTAGATTCCTTTTGAATGTTATAATCACCC 289 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||||| |||||||| || ||||| ||||||||||||| | || ||||| || || Sbjct 290 AAAGTTCGTCCGTCTTCCAGCTGTTTGCCAGCAAAAATTAAACGTTGCTGATCTGGTGGA 349 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 |||||||| ||||| |||||||| ||||| |||| ||| | |||||| |||||| ||| Sbjct 350 ATTCCTTCCTTATCTTGAATCTTGGCTTTGACATGTTCAATAGTATCGGAAGGTTCAACC 409 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTT 104561 || ||||| || || ||||| ||||| ||||| || ||||| ||||||| Sbjct 410 TCAAGTGTGATGGTTTTACCCGTAAGGGTTTTAACGAATATTTGCATTT 458 >seq138766 Length=1258 Score = 158 bits (174), Expect = 3e-33 Identities = 167/220 (76%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || || ||||| | |||||| |||||||| ||||| || || || || ||||| Sbjct 857 AGCCTCAGAACAAGATGGATTGTAGACTCTTTCTGTATATTGTAATCGGAAAGTGTTCTT 798 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || || || || || || |||||||| || || ||||| ||||| || || || || ||| Sbjct 797 CCATCCTCAAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCTGGTGGAATCCCCTCT 738 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 |||||||| || || || || ||||| || || | ||| || || ||||| ||||| Sbjct 737 TTATCCTGTATTTTGGCCTTGACATTCTCAACATTTTCGGATGGCTCCACCTCCAGTGTT 678 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTT 104561 || || || || || ||||||||||| || || ||||||| Sbjct 677 ATTGTTTTTCCCGTTAGTGTTTTTACGAAGATTTGCATTT 638 >seq123102 Length=1410 Score = 138 bits (152), Expect = 3e-27 Identities = 142/186 (76%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||||| ||| ||||||||||| |||||||||||||| || || | || | || || || Sbjct 835 TACTAAATGCAATGTAGATTCCTTCTGAATATTATAATCGGACAATGTGCGTCCATCCTC 894 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 || ||||| ||||| ||||| | | |||||||| || || |||||||||||||| || Sbjct 895 TAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTTATCTTG 954 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||| || ||||| |||||||| | |||||| ||| || ||||| | || || || || Sbjct 955 AATTTTAGCTTTAACATTTTCAATGGTATCAGAAGGCTCAACCTCCAAAGTGATGGTTTT 1014 Query 104530 ACCAGT 104535 || || Sbjct 1015 TCCCGT 1020 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 104459 TCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGT 104518 ||||| ||||| ||||| |||||||||||||| | |||||| ||||| ||||| || Sbjct 1216 TCTTTGTCCTGGATCTTGGCTTTTACATTTTCAATAGTATCGGATGGTTCAACCTCCAGA 1275 Query 104519 GTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || ||||| ||||| | || || || || || ||||||||| Sbjct 1276 GTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTTG 1320 >seq21876 Length=2391 Score = 100 bits (110), Expect = 7e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 ||||| || ||||| || ||||| || |||| | |||||||| ||||| || ||||| Sbjct 897 CCGTCCTCCAGTTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGAATACCTTCC 838 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || ||||||||||| ||||| || || || | || ||| || || || |||| || Sbjct 837 TTGTCCTGAATCTTAGCTTTGACGTTCTCAATAGTGTCGGATGGCTCGACTTCTAAAGTG 778 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || | |||||||| || || ||||| Sbjct 777 ATAGTTTTCCCTGTCAAAGTTTTTACGAAGATTTGCAT 740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1149347152806568