Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_005344.1 Length=39043 Score E Sequences producing significant alignments: (Bits) Value seq48654 147 5e-31 seq40252 80.6 7e-11 >seq48654 Length=89670 Score = 147 bits (162), Expect = 5e-31 Identities = 239/344 (69%), Gaps = 0/344 (0%) Strand=Plus/Plus Query 21567 CCACCAAGCATTTGCATGGTTCCACCAACGCCTACGATAACTTCGGTAGTGAACCTATCC 21626 ||||| ||||| |||||||| ||||||||| ||| | | |||||| ||| | | || Sbjct 37291 CCACCCAGCATCTGCATGGTGCCACCAACGTTTACCACGATTTCGGTGGTGTATTTTTCA 37350 Query 21627 TGTCCGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGAG 21686 ||| ||||| ||| || | || ||| | |||||||| |||||||| |||| Sbjct 37351 ACACCGGCCTGATCGGTCCACTTACGGGTTTGCAGTGCGCCTTCAATATAAACCTGAGAG 37410 Query 21687 CCTTTTCGCAGATATTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACGCGGTGC 21746 ||||| ||||| ||||||| || | |||||| ||||| ||| || || ||||||||| Sbjct 37411 CCTTTACGCAGGTATTCGCCCGCGACTTCTGCGAGTTTGCCGAACAACACAACGCGGTGC 37470 Query 21747 CACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGCA 21806 || || || | ||| || ||||| || || ||| || ||||| ||| || || || Sbjct 37471 CATTCAGTTTTCTCTTTCTGCTCGCCGGTCGCCTTGTCGCGCCAGCTTTCAGAAGTTGCC 37530 Query 21807 ACTGTAAGGTTTGCAAATGCCGTTCCTGATGGTGAATATCTGATTTCTGGATCATGCCCA 21866 | || | || |||| || || || ||| | || ||| ||||| || || Sbjct 37531 AGGGTGATATTGGCAACAGCACCGCCGTTAGGCATATAGCGGACTTCGGGATCCTGACCC 37590 Query 21867 AGGCGACCAATAATGATCACCTTATTTACGCCTCTGCTTGCCAT 21910 || |||| | ||||| || |||||||||||||| ||||| Sbjct 37591 AGATTCCCAACCAGAATCACTTTGTTTACGCCTCTGCTGGCCAT 37634 >seq40252 Length=19659 Score = 80.6 bits (88), Expect = 7e-11 Identities = 60/69 (87%), Gaps = 1/69 (1%) Strand=Plus/Plus Query 34061 CACCTGTGTTGT-TCTGAGGTGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTGTG 34119 ||||||| |||| | |||||||| | |||||||||||||||||||||||||||| | || Sbjct 15190 CACCTGTTTTGTCTATGAGGTGATGACATCACCTCTGTTCAGGTGGCCAAATTCACTATG 15249 Query 34120 CCACTTCAA 34128 ||||| ||| Sbjct 15250 CCACTACAA 15258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124609907409260