Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq88566 98.7 8e-16 seq123102 93.3 4e-14 >seq88566 Length=1870 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 || |||||||| | || |||||||||||||| |||||| |||| ||| |||| Sbjct 245 AATACTAAATGCAACGTAGATTCCTTTTGAATGTTATAATCACCCAAAGTTCGTCCGTCT 304 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 |||||||| || || | |||||||||| |||||||| || | | |||||| || Sbjct 305 TCCAGCTGTTTGCCAGCAAAAATTAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATCT 364 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 ||| || |||| | | || ||||||| || || ||| | ||| |||||| Sbjct 365 TGAATCTTGGCTTTGACATGTTCAATAGTATCGGAAGGTTCAACCTCAAGTGTGATGGTT 424 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || ||||| || || || ||||| Sbjct 425 TTACCCGTAAGGGTTTTAACGAATATTTGCAT 456 >seq123102 Length=1410 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || |||||||| |||||||||||||||||||| | ||| || | ||||| Sbjct 608 ACCAAGTGAAGTGTTGATTCCTTTTGAATGTTGTAATCGGATAATGTGCGTCCATCCTCA 667 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| ||| || |||||||||| || || || || | | |||||| || | Sbjct 668 AGCTGCTTGCCGGCGAAAATTAAACGTTGTTGGTCTGGGGGAATGCCTTCCTTATCTTGA 727 Query 48638 ATTTTCTGCTTGATAG-ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||||| ||||| | | | | |||||||| | || || || | ||| || ||||| Sbjct 728 ATTTT-TGCTTTAACGTTCTCGATGGTATCCGAAGGTTCAACTTCCAATGTGATAGTTTT 786 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || | ||||| ||||| || ||||| Sbjct 787 GCCAGTCAATGTTTTAACAAATATTTGCAT 816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420537337975046