Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq48654 196 3e-45 seq6040 107 1e-18 >seq48654 Length=89670 Score = 196 bits (216), Expect = 3e-45 Identities = 432/660 (65%), Gaps = 42/660 (6%) Strand=Plus/Minus Query 71541 GGTGGTTTTGCGTACCTTGCGGAGATGTCAAAGAACACGCCCAGCTCGGCAAATATTTGT 71600 || |||||||| || || || ||| ||||||| || ||||| || ||||||| || | Sbjct 52480 GGCGGTTTTGCCTATCTGGCAGAGCTGTCAAAAAATACGCCAAGTGCGGCAAACATCGGC 52421 Query 71601 GCTTATGCGGATATCGTTCGTGAACGCGCGGTTGTTCGTGAAATGATTTCCGTCGCAAAT 71660 || ||||| || ||||| |||||||| || ||||| || || |||||||| || || || Sbjct 52420 GCATATGCCGACATCGTGCGTGAACGTGCAGTTGTGCGCGAGATGATTTCTGTTGCTAAC 52361 Query 71661 GAAATAGCCGAAGCTGGATATGCGCAGGATGGCAGGGGCAGCAATGAATTGCTGGATATG 71720 ||||| ||||| || || || | | | | ||| | ||||| | || |||||||| || Sbjct 52360 GAAATTGCCGATGCGGGTTACGATCCGCAGGGCCGCAGCAGCGAAGACCTGCTGGATCTG 52301 Query 71721 GCCGAGCGCCGCGTTTTTGAAATAGCTGAAAAACGA--CAAAAGAGCGGTAGTGGTCCAA 71778 |||||| ||| || ||| | || || |||| || ||| | || | || | || | Sbjct 52300 GCCGAGTCCCGTGTCTTTCAGATTGCAGAAAGCCGCGCCAATAAAGATGAAG--GCCCGA 52243 Query 71779 AAGATATCGCCAGCATTCTCGATGCAACGGTATCTCGCATAGAAGAGTTGTTTCAGCGAC 71838 || ||| | ||||||| || || || | || || |||||| |||| || || | Sbjct 52242 AAAGCGTCGACCGCATTCTGGAAAGCACCGTTGCGCGTATCGAAGAGCTGTTCCAACGCC 52183 Query 71839 CACATGATGGTGT--------------------------------------AACGGGGCT 71860 |||| ||| || | Sbjct 52182 CACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCGGCGT 52123 Query 71861 TGATACGGGATTTACCGATCTCAATAAGAAGACGGCAGGGCTTCAGCCGTCCGATCTCAT 71920 || || | || ||||||| | ||||| ||||| || | ||| |||||| | || Sbjct 52122 GTCGACCGGCTATAGCGATCTCGACAAGAAAACGGCTGGCTTGCAGAAGTCCGACTTAAT 52063 Query 71921 CATTGTCGCCGCCCGCCCATCTATGGGGAAGACCACGTTTGCGATGAATCTCGTCGAAAA 71980 ||| ||||| || || || || ||||| || ||||| || || ||||| || |||||| Sbjct 52062 CATCGTCGCAGCTCGTCCGTCGATGGGTAAAACCACCTTCGCCATGAACCTGTGCGAAAA 52003 Query 71981 TGCCGCAGTTCGTAACGATAAGCCCGTATTGGTTTTTAGCCTTGAGATGCCGAGCCACCA 72040 ||||| | | || || || || | | || ||||| |||||||| || | || Sbjct 52002 CGCCGCGATGATGCAGGAAAAACCGGTGCTTATCTTCAGCCTCGAGATGCCCGGCGATCA 51943 Query 72041 GCTGATGATGCGCTCACTGGCTTCTCTTGCACGCGTTGATCAGACTCGTATTCGGACAGG 72100 |||||||||||| ||||| || || | |||||||| ||||| ||||| || || || Sbjct 51942 GCTGATGATGCGTATGCTGGCCTCGCTGTCCCGCGTTGACCAGACCCGTATCCGTACCGG 51883 Query 72101 GCAACTTAACGACGAGGATTGGGCGCGGGTTTCTGGCGCAATGGGTATTCTGTTGGACAA 72160 || ||| |||| || || |||||||| |||| || | ||||| || ||| | || || Sbjct 51882 TCAGCTTGACGATGAAGACTGGGCGCGTATTTCCAGCACCATGGGGATCCTGCTCGAAAA 51823 Score = 185 bits (204), Expect = 5e-42 Identities = 242/335 (72%), Gaps = 0/335 (0%) Strand=Plus/Minus Query 21063 GGTGTAAACAAAGTCATCCTGATTGGTACCCTGGGGCAAGACCCGGAGATCAGGTATATA 21122 || ||||||||||| || ||| |||| | ||||| || || || || || | ||||| Sbjct 37622 GGCGTAAACAAAGTGATTCTGGTTGGGAATCTGGGTCAGGATCCCGAAGTCCGCTATATG 37563 Query 21123 CCAAATGGCGGCGCGGTCGGAAGACTCAGCATCGCAACGAATGAATCATGGCGCGACAAG 21182 || || ||||| || || | | ||| | | ||||| |||| |||||||||||| Sbjct 37562 CCTAACGGCGGTGCTGTTGCCAATATCACCCTGGCAACTTCTGAAAGCTGGCGCGACAAG 37503 Query 21183 CAAACGGGCCAACAGAAAGAGCAAACAGAATGGCATAAAGTCGTTTTGTTCGGAAAACTT 21242 || ||| | ||||||||| |||| |||||||| || || |||||||| ||||| Sbjct 37502 GCGACCGGCGAGCAGAAAGAGAAAACTGAATGGCACCGCGTTGTGTTGTTCGGCAAACTC 37443 Query 21243 GCTGAAATTGCGAGTGAGTATTTACGAAAAGGTTCTCAGGTCTACATCGAAGGGAAACTT 21302 || ||| | ||| | || || | || ||||| |||||||| || || ||||| ||| Sbjct 37442 GCAGAAGTCGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTTTATATTGAAGGCGCACTG 37383 Query 21303 AAAACCCGTAAGTGGACAGATGACGCCGGTGTAGAACGTTACACGACGGAAATTATCGTC 21362 |||||||||||||||| ||| | |||||||| ||| ||||| || ||||| | || Sbjct 37382 CAAACCCGTAAGTGGACCGATCAGGCCGGTGTTGAAAAATACACCACCGAAATCGTGGTA 37323 Query 21363 AGCCAGGGCGGCACCATGCAAATGATCGGCGCTCG 21397 | | || ||||||||||| ||| | || | ||| Sbjct 37322 AACGTTGGTGGCACCATGCAGATGCTGGGTGGTCG 37288 Score = 178 bits (196), Expect = 8e-40 Identities = 226/311 (73%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 72324 GCCGAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATTACAAGTACCGGTGGTGGCA 72383 ||||||||||| ||||| || | |||||| ||||| || | || || ||||||||||| Sbjct 51622 GCCGAGATTTCACGCTCGCTCAGGGCGTTAGCGAAAGAGCTGCAGGTGCCGGTGGTGGCG 51563 Query 72384 TTGTCACAACTTAATCGATCGCTTGAACAGCGTGCGGACAAACGACCGGTAAATTCAGAT 72443 | || || || || ||| || || |||||||| || || || ||||| || || || Sbjct 51562 CTTTCTCAGCTGAACCGAAGCCTGGAGCAGCGTGCCGATAAGCGCCCGGTCAACTCCGAC 51503 Query 72444 TTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTATGTTTCTGTATCGCGAC 72503 | |||||||| || | || ||||||||||| ||| |||| |||||| | ||||||||| Sbjct 51502 CTCCGTGAATCTGGTTCCATCGAGCAGGACGCCGACTTGATCATGTTTATCTATCGCGAC 51443 Query 72504 GAAGTTTATCACCCGGATAGCGAAATGAAGGGCATTGCCGAGGTAATTATCGGAAAGCAA 72563 || || |||||| | |||||| ||||| || || | | ||| |||| || || Sbjct 51442 GAGGTCTATCACGACAACAGCGAAGAAAAGGGGATCGCGCAAATCATTCTCGGCAAACAG 51383 Query 72564 CGAAATGGCCCAATTGGCACGGTGAGATTGGCTTTTAACGGCCAATACTCACGGTTTGAT 72623 || || || || || |||||||| | | | |||||||| || | || || || ||| Sbjct 51382 CGTAACGGTCCGATAGGCACGGTTCGCCTCACATTTAACGGTCAGTGGTCGCGATTCGAT 51323 Query 72624 AACTATGCCGG 72634 ||||| | ||| Sbjct 51322 AACTACGGCGG 51312 >seq6040 Length=129903 Score = 107 bits (118), Expect = 1e-18 Identities = 78/89 (88%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 70932 CGGCCCTTTAGCTCAGT-GGTTAGAGCTGGCGACTCATAATCGCACGGTCACCGGTTCAA 70990 |||||| |||||||||| ||||||||| ||||||||||||||| |||||| ||||||| Sbjct 118275 CGGCCCCTTAGCTCAGTTGGTTAGAGCACGCGACTCATAATCGCTTGGTCACTGGTTCAA 118334 Query 70991 GTCCGGTAGGGGCCACCATATTTGGTTGT 71019 |||| ||||||||||||| |||| | ||| Sbjct 118335 GTCCAGTAGGGGCCACCAAATTTAGCTGT 118363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 302721330617766