Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_005859.1 Length=121750 Score E Sequences producing significant alignments: (Bits) Value seq14905 120 2e-22 seq38357 93.3 3e-14 >seq14905 Length=119551 Score = 120 bits (132), Expect = 2e-22 Identities = 131/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 27665 CTGAGTAAATGTACGACTAATAACGTCGTTCTGCTGTTCACGCGTCAGTGCGTTAAAACG 27724 |||||| || |||||| | || ||||| | ||||||||| |||||| | ||||||||| Sbjct 42450 CTGAGTGAAAGTACGAGTGATCACGTCCTGCTGCTGTTCCGGCGTCAACGAGTTAAAACG 42391 Query 27725 CACAGCGTACCCTGAAACACGGATAGTTAATTGAGGGTATTTTTCAGGATGTTTCTGTGC 27784 ||| |||||||| || ||||||||||| || ||||| || || ||||||||||| || Sbjct 42390 CACGGCGTACCCCGAGACACGGATAGTCAACTGAGGATACTTCTCAGGATGTTTTATCGC 42331 Query 27785 ATCCAAAAGCTGATCACGACTTAACACATTGACATTTAGGTGTTGACCACCTTC 27838 ||| ||| ||||||| | || || || || || || || || ||||| Sbjct 42330 ATCTTCGAGCGTCTCACGACGCATGACGTTAACGTTAAGATGCTGCCCCCCTTC 42277 >seq38357 Length=36386 Score = 93.3 bits (102), Expect = 3e-14 Identities = 244/371 (66%), Gaps = 6/371 (2%) Strand=Plus/Plus Query 54501 ACTGAAAAAGAAGTCTATGATGCTTGTCAGGGTCTAGAGTATGAGATCAATACGATGTTC 54560 || |||||||| ||| || || | |||| || || |||||| | |||||| | | Sbjct 27564 ACAGAAAAAGAGTGCTACGACGCCTTTCAGTCGCTGGAATATGAGGTTAATACGCTTCAC 27623 Query 54561 AACTCTAATGGTCAGAGTCCATTTATTACTTTTGGTTTTGGTCTAGGAACTTCTTGGGAA 54620 | | | || || |||| || ||| | || ||||| |||||||| || || | |||| || Sbjct 27624 ACCGCCAACGGCCAGACGCCGTTTGTGACCTTTGGCTTTGGTCTGGGTACCTGTTGGCAA 27683 Query 54621 GCACGTCTAATACAGAAAGCAATACTGAAAGTACGTATGGATGGCTTAGGCATCAATAAA 54680 || || || || || ||| | || ||| ||||| | || ||||| | ||| Sbjct 27684 GCGCGGCTGATTCAAAAATCGATTCTGCGCAACCGTATCGCCGGATTAGGAAAAAAT--- 27740 Query 54681 CGTACA---GCTATCTTTCCGAAACTGGTGTTTGTTCTGCGTGATGGCGTAAATATGAAG 54737 |||| | || | ||||| |||||||| || | | || || ||| ||||| ||| Sbjct 27741 CGTAAAACGGCCGTGTTTCCCAAACTGGTTTTCGCCATTCGCGACGGCATAAATCATAAG 27800 Query 54738 CCTGGAGATGTTAATTATGACATCAAGAAGTTAGCTATGAAATGTACTGCTGAACGTATG 54797 | | || | |||||||||||||| || | || | ||||| | | |||||| Sbjct 27801 GCGGCCGACGCCAATTATGACATCAAACAGCTCGCCCTCGAATGTGCCAGCAAGCGTATG 27860 Query 54798 TATCCAGACTATATCAGCTATGATAAGGTTGTGGAAGTTACTGGTGACTATAAAGTTTCT 54857 ||||| || | | | || ||| |||| || | || || ||| | |||| | Sbjct 27861 TATCCCGATATTCTTAATTACGATCAGGTGGTTAAGGTCACCGGTTCGTTTAAAACCCCG 27920 Query 54858 ATGGGCTGCCG 54868 ||||||||||| Sbjct 27921 ATGGGCTGCCG 27931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 388815186319466