Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_005887.1 Length=42415 Score E Sequences producing significant alignments: (Bits) Value seq139038 116 1e-21 >seq139038 Length=11747 Score = 116 bits (128), Expect = 1e-21 Identities = 173/243 (71%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 26174 CGGCGCTCGACGACGTCCTCGTCGATCGTGTCGCGCGCGATGATCGGGTAGATGAAAACG 26233 |||||||| ||||| | ||||||| ||| || || ||| | | | ||||| Sbjct 10843 CGGCGCTCCGCGACGACTTCGTCGAGCGTACCGGCAGCCTGTATCAAGAACACAAAAACT 10784 Query 26234 GGGCGGCGGTGGCCGGCCTGCAGCTGGCGCACGGGTCCGATCCGCTCGACGATCTGCAGG 26293 || || | ||||| ||||| | || ||||| || || || || |||||||||||| Sbjct 10783 GGCCGTGGATGGCCCGCCTGATGTTGTCGCACTGGCCCTATTCGTTCGACGATCTGCGAA 10724 Query 26294 TATTCCTCGAGGTTCCACCAGTGGCCGAAGACCGCAAGGATGTTG-CCGCCGTCCTGCAG 26352 || | || | ||||||| | | || || || || ||| || |||||||| |||| Sbjct 10723 TAGTATTCCAAGTTCCACGTATCACTAAAAACGGCCAG-ATGGTGTCCGCCGTCTTGCAA 10665 Query 26353 GTTCAGGCCGTGGCCGGCGCTGGCCGGGTGCGCGAACATCACCGGGATCTTGCCAGCGTT 26412 ||| |||||||| ||||||||||||||||| || || | || |||||||| || ||| Sbjct 10664 GTTAAGGCCGTGCCCGGCGCTGGCCGGGTGAGCCAATAGCATAGGGATCTTCCCTTGGTT 10605 Query 26413 CCA 26415 ||| Sbjct 10604 CCA 10602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135382490611004