Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq74419 143 3e-29 seq101742 93.3 5e-14 seq86164 82.4 9e-11 >seq74419 Length=1556 Score = 143 bits (158), Expect = 3e-29 Identities = 234/336 (70%), Gaps = 6/336 (2%) Strand=Plus/Minus Query 164769 TGGTGATAATATTATTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGT 164828 |||| ||| | | |||| ||| ||||||||||||| | || ||||||| |||||||| Sbjct 669 TGGTAATAGTGGTGTTCACGATACAGTGGTTAATCAACTACTAGCTAAAATCGATGGTGT 610 Query 164829 AGAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGA 164888 |||| || || || ||| | || | || ||||| || ||| |||| | |||||||| Sbjct 609 AGAACAATTGAACAACATTCTGGTTATTGGCATGACAAATAGACGTGATATGATTGATGA 550 Query 164889 TGCTTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGA 164948 |||||| | |||| ||||| || ||| || |||| || || | || || | |||| Sbjct 549 AGCTTTAATGAGACCCGGTCGCTTGGAAGTGCAAATGGAGATTAGTTTGCCAAATGAAGA 490 Query 164949 AGGACGCCTTCAAATTTTAAAAGTTCATGTGGCTAAA---ATGAAATCCTGTGATATATT 165005 |||||| | ||||||||||| | || | ||| ||| || | ||| | Sbjct 489 GGGACGCGTGCAAATTTTAAATATCCA---CACCAAACGTATGCGTGACTATAATAAGAT 433 Query 165006 ATCTCCCGATGTAGATTTAAATAAAATAGCTGCCGAAACTAAAAATTATAGTGGTGCTGA 165065 |||| ||||| ||| || | || || || || || || | |||||||||||| Sbjct 432 TGCTCCTGATGTGGATAACAAAGAGATTGCCGCATTGACAAAGAACTTTAGTGGTGCTGA 373 Query 165066 ATTAGAGGGATTAGTAAGAGCCGCTCAATCAACCGC 165101 | ||||||| |||||| | || || ||||| ||||| Sbjct 372 AATAGAGGGTTTAGTACGCGCAGCACAATCCACCGC 337 >seq101742 Length=1472 Score = 93.3 bits (102), Expect = 5e-14 Identities = 249/370 (67%), Gaps = 18/370 (5%) Strand=Plus/Plus Query 6801 TCGAGTTAATTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAG 6860 ||| ||||| ||||| || | | || || ||| | ||| | ||||| ||| |||| Sbjct 15 TCGTGTTAACTGTTCCTTCAATGGTTCAATGTGACTTTTATAGACATGAGTATCACCTAA 74 Query 6861 CGTATGAATAAATTCACCTGGTTTCATA-TCAACAGCT---TGAGCAATTAAATATGTTA 6916 || |||| ||| || || || || | || ||| | || || || | || || | Sbjct 75 GGTGTGAACAAAGTCTCCAGGA--CAAAGTC--CAGTTATATGTGCGATCATGTAAGTGA 130 Query 6917 ATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGAT 6976 | || || ||||| | ||| || || ||||| |||||||||||||| | ||| | Sbjct 131 GCAGGGCGTAGGAAGCAATATTGAATGGCACACCCAATCCCATATCTGCACTACGTTGGT 190 Query 6977 AACATTGACAAGATAAAATATTGTCTATAGCAT---AAAATTGACACAATACA-TGACAT 7032 | |||||||||||| || ||||| ||||||| | | | ||| ||||| Sbjct 191 ACAATTGACAAGATAGCTCTCCGT---TAGCAACGAAAAATTG-CGCCAGACAATGACAC 246 Query 7033 GGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTA 7092 || ||||| | || ||||||| |||||||| |||| ||||| ||| |||| | Sbjct 247 GGTGGTAATGCCATTTGTGGTATATCAACCGGATTCCATGCAGACATTATAATGCGTCGA 306 Query 7093 TCATTTGGATTTGTTTTTAATTTTGT-TATAATTATTTGTAATTGATCTATACCCTGACC 7151 ||||||||| || || | ||| | | |||| | ||| | |||||||| |||| ||| Sbjct 307 TCATTTGGA-TTATTCCTGATTGTATCAATAACTTGTTGAAGCTGATCTATGCCCTCACC 365 Query 7152 TTCATAATTA 7161 || || ||| Sbjct 366 TTTGTAGTTA 375 >seq86164 Length=15879 Score = 82.4 bits (90), Expect = 9e-11 Identities = 165/241 (68%), Gaps = 8/241 (3%) Strand=Plus/Minus Query 129322 TGTTCTTAAATAATATAAACCTTTACAACCTAACTTCCAAGCATCAAAATGAACCTTATG 129381 || ||| |||||||||||| |||| ||| |||||||| | |||||||| | || Sbjct 13778 TGATCTACAATAATATAAACTTTTAACTCCTTTTTTCCAAGCTTTAAAATGAATATCATT 13719 Query 129382 AAG-TATTTTACGCTGAGTATGAGGGGGGAAAAATAAATTAAGAGATTGACCCTGGCAAA 129440 || |||||| ||| | || | ||| | ||| | ||| | |||||| |||| || Sbjct 13718 TAGATATTTTTTGCTAAC-ATTACCGGGTAGAAAGACATTTAAAGATTGTGCCTGAGTAA 13660 Query 129441 TATATTTTTGTCTAAGA---GCAGCTTGTTCAATCAAGACATTTTGATCTATTTCATAAG 129497 |||| | || || || ||| | || |||| ||||||||| |||||||| | Sbjct 13659 TATAAG---GAGTACGATCTGCTGCTAGCTCTATCAGCCAATTTTGATCAATTTCATAGG 13603 Query 129498 CAGTTTTAAACACAAGTTTTTCACGATCTGTTAAAAAAGGTAAATGTTGAACAGAACCAT 129557 |||||||||| || | ||||| || ||||| || | || ||| || || || || | Sbjct 13602 CAGTTTTAAAGACTTGCTTTTCTTCTTCAGTTAAGAATGTTAGATGCTGCACTGATCCTT 13543 Query 129558 C 129558 | Sbjct 13542 C 13542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594836329773600