Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq88566 147 2e-30 seq123102 111 1e-19 seq21876 109 5e-19 seq138766 93.3 4e-14 seq119770 93.3 4e-14 >seq88566 Length=1870 Score = 147 bits (162), Expect = 2e-30 Identities = 171/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| | ||||| || || ||||| |||||||||||||| | ||||||||| | | Sbjct 230 CCTCCTCTGAGACGCAATACTAAATGCAACGTAGATTCCTTTTGAATGTTATAATCACCC 289 Query 94841 ATAGT--GTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | ||| || | || ||||||||||| || |||| ||||| | |||||||||||| | Sbjct 290 AAAGTTCGTCCG--TCTTCCAGCTGTTTGCCAGCAAAAATTAAACGTTGCTGATCTGGTG 347 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||| ||||| || || | ||| || || ||||| | | ||| || | | || | Sbjct 348 GAATTCCTTCCTTATCTTGAATCTTGGCTTTGACATGTTCAATAGTATCGGAAGGTTCAA 407 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | |||| ||||||||||| || ||||| ||||| || || || ||||| Sbjct 408 CCTCAAGTGTGATGGTTTTACCCGTAAGGGTTTTAACGAATATTTGCAT 456 >seq123102 Length=1410 Score = 111 bits (122), Expect = 1e-19 Identities = 156/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGG-- 94850 |||| |||||||| | || ||||||||||| | ||| |||||| ||| ||| | Sbjct 602 CGCAGAACCAAGTGAAGTGTTGATTCCTTTTGAATGTTGTAATCG--GATAATGTGCGTC 659 Query 94851 AATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 |||||| ||||| || ||| | || ||||| | ||| || ||||| ||||| ||||| | Sbjct 660 CATCCTCAAGCTGCTTGCCGGCGAAAATTAAACGTTGTTGGTCTGGGGGAATGCCTTCCT 719 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 | || | ||||||||| || ||| ||| || || | | || || || | |||| Sbjct 720 TATCTTGAATTTTTGCTTTAACGTTCTCGATGGTATCCGAAGGTTCAACTTCCAATGTGA 779 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| ||||| | ||||| ||||| || ||||| Sbjct 780 TAGTTTTGCCAGTCAATGTTTTAACAAATATTTGCAT 816 Score = 89.7 bits (98), Expect = 5e-13 Identities = 155/223 (70%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 94764 TTTTAA--AAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCT 94820 |||||| ||| ||| || ||||| | | || || || || ||||| |||||||||| Sbjct 798 TTTTAACAAATATTTGCATACCTCCACGAAGGCGTAATACTAAATGCAATGTAGATTCCT 857 Query 94821 TTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTA 94880 | || | ||||||||| || ||| |||||| | |||||| || | || || | Sbjct 858 TCTGAATATTATAATCGGACAATGTGCGTCCATCCTCTAACTGTTTGCCAGCGAAAATCA 917 Query 94881 ATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGA 94940 | | ||| |||||||| || || |||||||| || | |||||| || || || | | Sbjct 918 AACGTTGTTGATCTGGTGGGATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAA 977 Query 94941 CAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 || |||| | || || || | |||||||||||||| || Sbjct 978 TGGTATCAGAAGGCTCAACCTCCAAAGTGATGGTTTTTCCCGT 1020 >seq21876 Length=2391 Score = 109 bits (120), Expect = 5e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 |||||||| || || || | |||||||| | ||| |||||||||||||||||||| ||| Sbjct 894 TCCTCCAGTTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGAATACCTTCCTTG 835 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || || |||||| | | |||||| | | ||||| || | ||||| Sbjct 834 TCCTGAATCTTAGCTTTGACGTTCTCAATAGTGTCGGATGGCTCGACTTCTAAAGTGATA 775 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || | |||||| || ||||| ||||| Sbjct 774 GTTTTCCCTGTCAAAGTTTTTACGAAGATTTGCAT 740 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| || | || |||||||| || | ||| |||||| || || | | Sbjct 726 CGCAGGACCAAATGAAGCGTTGATTCCTTCTGAATGTTGTAATCGGACAAGGTACGGCCA 667 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| || || ||| | |||||||| | ||||||||||| ||||| || || ||| Sbjct 666 TCTTCCAATTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGGGGAATTCCCTCCTTG 607 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| ||| ||| ||||||| | || || || | ||||| Sbjct 606 TCCTGGATCTTAGCCTTAACGTTTTCGATGGTGTCAGACGGCTCAACTTCCAGGGTGATA 547 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| | |||||| || ||||| ||||| Sbjct 546 GTCTTGCCAGTCAAAGTTTTTACGAAGATTTGCAT 512 >seq138766 Length=1258 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| ||||| || || ||||||| | ||| ||||||||||| ||||| || ||||| Sbjct 795 ATCCTCAAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCTGGTGGAATCCCCTCTTT 736 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | ||||| |||||||| | ||| | || | | || || || | || || Sbjct 735 ATCCTGTATTTTGGCCTTGACATTCTCAACATTTTCGGATGGCTCCACCTCCAGTGTTAT 676 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||| || || ||||| || ||||| ||||| Sbjct 675 TGTTTTTCCCGTTAGTGTTTTTACGAAGATTTGCAT 640 >seq119770 Length=1537 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 ||||| |||| ||| | || ||||| ||||| | || || ||| |||| || | Sbjct 878 CGCAATACCAGGTGAAGTGTTGATTCTTTTTGAATATTGTAGTCGG--ATAGAGTACGTC 935 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| || | ||||||||| | || || | | ||| |||||||| ||||||||||||| Sbjct 936 CATCTTCTAATTGTTTTCCGGCGAAAATAAGACGTTGTTGATCTGGTGGAATACCTTCTT 995 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 | || | ||| || || ||||| | | ||||||| | || || || | |||| Sbjct 996 TATCCTGAATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGCTCCACCTCTAAGGTGA 1055 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || ||||| || ||||| || || || ||||| Sbjct 1056 TGGTCTTGCCAGTTAGTGTTTTGACGAAAATTTGCAT 1092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447512036272560