Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq105482 96.9 5e-16 >seq105482 Length=1169 Score = 96.9 bits (106), Expect = 5e-16 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || |||||||||||||| || |||||||| ||||| |||||| |||| || || ||||| Sbjct 611 CGTGATAACATCCAAGGTATTACCAAGCCGGCTATTCGTCGTTTGGCACGCCGCGGTGGT 552 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 ||||||||| | ||||| | | |||||||| | || | ||| |||||| Sbjct 551 GTCAAGCGTATTTCTGGTCTAATTTATGAAGAAACGCGCGGTGTCTTGAAG 501 Score = 86.0 bits (94), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 16549 GATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATAC 16608 ||||| || | ||||| || | || | | | |||||| | |||||| || ||| || Sbjct 406 GATTCCTGGT-TTTTGTAGGTGTTTTTGGAAAACGTTATTCGTGATGCAGTCACCTACAC 348 Query 16609 CGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCA 16668 || || ||||| ||||| ||||||||| | ||||| | || |||||||||||||| || Sbjct 347 TGAACATGCTAAGCGTAAAACTGTCACCGCTATGGACGTAGTATATGCATTGAAACGCCA 288 Query 16669 AGGCCGTAAGATTTATGGTTTTGG 16692 ||| || | |||| || ||||| Sbjct 287 AGGTCGCACCCTTTACGGCTTTGG 264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78948069268878