Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_006657.1 Length=19820 Score E Sequences producing significant alignments: (Bits) Value seq16226 850 0.0 seq63457 578 5e-161 seq7299 86.0 8e-13 seq9969 82.4 1e-11 >seq16226 Length=1877 Score = 850 bits (942), Expect = 0.0 Identities = 790/1021 (77%), Gaps = 105/1021 (10%) Strand=Plus/Plus Query 12305 ACTTCAGATATTTTAGCATCTGTCGATTGATAATCAATAAGTTCCTTTAAAAAT-GATAA 12363 |||||||||||||||| |||||| |||| ||||||||||||||||||||||| |||| Sbjct 495 ACTTCAGATATTTTAGAATCTGTTGATTCGTAATCAATAAGTTCCTTTAAAAAACGATAG 554 Query 12364 ATCATTATTTGGAGCTTCAGATGCGAGAGGACAAGTGAACCATGCTTTGATATACACTGT 12423 || ||||||||||||||||| | ||||||||||| |||||| | |||||||||||||| Sbjct 555 CTCGTTATTTGGAGCTTCAGACGGCAGAGGACAAGTAAACCATACCTTGATATACACTGT 614 Query 12424 AGCAATAAAAACACAAATTTCAGAAACGGATTTGATTAATTTCACCGTCATTTTGAATTG 12483 |||||||||| |||||||||||||| | ||||| ||||||||||| ||||| |||||| Sbjct 615 GGCAATAAAAATACAAATTTCAGAAATTGGTTTGAATAATTTCACCGCCATTTGGAATTG 674 Query 12484 TTTACGAAATAAAAATATTTTTATAGTATATATGGCTTT-------TGCC---------- 12526 ||| ||||||| |||||||||| ||||||||| | | |||| Sbjct 675 CTTATGAAATAAGAATATTTTTAAAGTATATATATATATCAATATCTGCCCAATGCTCTC 734 Query 12527 ---------ATC-------------------CACCTAGCGTGGTGGAATGCACCCGGTTT 12558 ||| || ||||| || ||||||||||||||||| Sbjct 735 GAAATCGAAATCTCGAAGTTGTAGGTATTTNCATCTAGCTTGATGGAATGCACCCGGTTT 794 Query 12559 TCGAAATTTTACTTAACTGCAGGGAACTTTACCAATAAATATCTGAACAAGCTCCAAAAG 12618 || |||| |||||| |||||| ||||||| | |||||||||||||||||||||||| ||| Sbjct 795 TCTAAATCTTACTTTACTGCACGGAACTTCATCAATAAATATCTGAACAAGCTCCAGAAG 854 Query 12619 TTCCCGGTAGTCTTCCCTTGGTTGATTTGAATCAAGTTGCTTTTGGATAAAGTGATTAAT 12678 ||| | ||| | || |||| || | ||||| ||||||||||| ||||| |||| || Sbjct 855 TTCTCTGTATACATCTCTTG-TTCA---GAATCTAGTTGCTTTTGAATAAATGGATTGAT 910 Query 12679 GTCATCAATATGATTTTGTATTTTTTCTTGCACATACGAATCTTCAATCCCATTAGAATA 12738 || ||||| |||||||||||||| |||||||||||||| | ||||| ||| ||||||| Sbjct 911 GTTTTCAATGTGATTTTGTATTTTGTCTTGCACATACGAGTTTTCAACGCCAGTAGAATA 970 Query 12739 TTGACTTATATCAATTTCGCCCCAGCTCTCTCGAAATCTTTTAAATAAAGGTACATCAGG 12798 ||||||| |||||||||| || | |||||||||| ||||||| || ||||| ||||| Sbjct 971 TTGACTTGTATCAATTTCTGCCAAATGCTCTCGAAATATTTTAAACAATGGTACGTCAGG 1030 Query 12799 ACCTGAGGTTGTAGGTATTTTAAGTTCAAAAACACCCCTGAGGATAAGTTCAAATATGTG 12858 |||||| |||||||||||||||||||||||| | |||| | ||||||||||||||||| Sbjct 1031 ACCTGAAGTTGTAGGTATTTTAAGTTCAAAAGCCTCCCTTAAAATAAGTTCAAATATGTG 1090 Query 12859 ATGCCTGCAAGGCAAATACAATAGttttttttCAAGCAA--------------------- 12897 ||| ||||| ||||||||| | | ||| |||||||||| Sbjct 1091 ATGGCTGCAGGGCAAATACCGTTGCTTTCTTTCAAGCAANNNNNNNNNNNNNNNNNNNNN 1150 Query 12898 ------------------------CCGTTCCAGTGAAACTGCAGCTCCTTTACTTGATCC 12933 | |||| ||| |||||||||||||||||||||||| Sbjct 1151 NNNNNNNNNCTTTCTTTCAAGCAACTGTTCAAGTAAAACTGCAGCTCCTTTACTTGATCA 1210 Query 12934 TAGATTTGCAGCAGTAGTATCACAGCATAGAGCTTTAATAAAGTCTGGAATTCCCCAATC 12993 || |||||||||||| ||||||||||| |||||||||||| |||| ||||| ||||||| Sbjct 1211 TAAATTTGCAGCAGTCGTATCACAGCAAAGAGCTTTAATACAGTCAGGAATACCCCAATT 1270 Query 12994 ATTAATAGCGTCAAACATTGCATCAGCTTGCGACTGACCTGTTCCATCATCTAGTACTGG 13053 | |||||| ||||||||||||||||||||| ||||| ||||| | |||||||||||||| Sbjct 1271 AATAATAGAGTCAAACATTGCATCAGCTTGAGACTGTCCTGTAGCCTCATCTAGTACTGG 1330 Query 13054 GATCGCTAATATTTTTTCAATTTGCCCACAA----CTCAATACAACTGGTAGTCGTTCTT 13109 ||| ||||||||||||||||| | || | |||| || |||| |||||| | Sbjct 1331 GATAGCTAATATTTTTTCAAT-----AATAATATTTTTAATAGAATCGGTACTCGTTCCT 1385 Query 13110 TATTTTTTCCACTTGACGTTTTTAAAATTTTTCCATCCCAGTGAAGAACACTAGCATTCA 13169 |||||||| |||| || |||||| |||||||||||| |||||| | |||||||||||||| Sbjct 1386 TATTTTTT-CACTAGAAGTTTTTTAAATTTTTCCATTCCAGTGTACAACACTAGCATTCA 1444 Query 13170 AGTCTTGAGTTTTGAAAAGTTCTTTGATTTGTTTTACTTTCTCTTCACGGATTTTCACTC 13229 ||| || |||||| ||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 1445 AGTATTCAGTTTTTAAAAGTTCTTTGATTTGTTTTACTTTCTCTTCACGTATTTTTTCTC 1504 Query 13230 T 13230 | Sbjct 1505 T 1505 Score = 140 bits (154), Expect = 4e-29 Identities = 106/125 (85%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 12166 TTCTGAATTTGTGTCAATACTTTTTAACATAATCACCATCTGGTTCTTGATGTTTGATGA 12225 ||||||| || | ||||||| || |||||||||||||||||||| | |||||| ||| Sbjct 1 TTCTGAACTTTTATCAATACGCTTCAACATAATCACCATCTGGTTATCAATGTTTAGTGA 60 Query 12226 TATTCTTTCATCAAAGAATGCCATAGCTACAGTTTCTGGGTTTAAATACCACAAATGCAT 12285 ||||||||| ||||| || ||||||||| | |||||||| ||||||||||||| |||| | Sbjct 61 TATTCTTTCGTCAAAAAACGCCATAGCTGCCGTTTCTGGATTTAAATACCACAGATGCTT 120 Query 12286 GCTAA 12290 ||||| Sbjct 121 GCTAA 125 >seq63457 Length=1370 Score = 578 bits (640), Expect = 5e-161 Identities = 502/634 (79%), Gaps = 58/634 (9%) Strand=Plus/Plus Query 11883 TAAATTGCTGCCGCTCTGGATCCTTGCTTAATATACTGTGGTACTCTTCAATAAGTTTTA 11942 ||||||||||| |||||| ||||||||||| |||| | ||||| |||||||| | ||| | Sbjct 316 TAAATTGCTGCTGCTCTGAATCCTTGCTTAGTATATTATGGTATTCTTCAATTAATTTCA 375 Query 11943 CTGCACGCTCAGCGATATCATTAACAACCTTCAAACTTCTTACCAATAGCAAACCCTTCT 12002 | ||||||||||| |||||||||||||| ||||| |||| ||| ||| |||| ||||||| Sbjct 376 CCGCACGCTCAGCAATATCATTAACAACTTTCAAGCTTCGTACTAATCGCAAGCCCTTCT 435 Query 12003 GGTAATCTTCATTTTGACACCACTCAGATGGATTCAAATTCAAAAAATCTGTATTTATTC 12062 | |||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 436 GATAATCTTCATTTTGACACCACTCAGACTGATTTAAATTCAAAAAATCTGTATTTATTT 495 Query 12063 CAAATCTTTCGAAAAACTGGAGCGATCTTGATGACACGAATGAAGCAATGTTCCAGTCAT 12122 |||| | || |||||||| ||| |||||||| || | ||||||| | | |||||| | || Sbjct 496 CAAACCGTTTGAAAAACTTGAGTGATCTTGAGGATATGAATGAATCCACGTTCCATTTAT 555 Query 12123 ATACATCTCTAATATTTTTAATTTCGAATCGTTTCAAATTTATTTCTGAATTTGTGTCAA 12182 |||||||||||||||||||||||||||| ||| |||||| |||||||| Sbjct 556 ATACATCTCTAATATTTTTAATTTCGAAGCGTATCAAAT---TTTCTGAA---------- 602 Query 12183 TACTTTTTAACATAATCACCATCTGGTTCTTGATGTTTGATGATATTCTTTCATCAAAGA 12242 ||||| | |||| ||| ||| |||| Sbjct 603 ---CTTTTATCTTAAT---------GTT----TTGTGTGAT------------------- 627 Query 12243 ATGCCATAGCTACAGTTTCTGGGTTTAAATACCACAAATGCATGCTAAATTTTTTCAATG 12302 | |||||||||| ||||||||||||| |||| |||||||| | |||| || Sbjct 628 ----------TGCAGTTTCTGGCTTTAAATACCACAGATGCTTGCTAAATCTCTTCAGTG 677 Query 12303 CCACTTCAGATATTTTAGCATCTGTCGATTGATAATCAATAAGTTCCTTTAAAAATGATA 12362 | |||||||||||||||| |||||||| || |||||||||||||| |||||||| |||| Sbjct 678 CTACTTCAGATATTTTAGAATCTGTCGGTTCGTAATCAATAAGTTCTTTTAAAAACGATA 737 Query 12363 AATCATTATTTGGAGCTTCAGATGCGAGAGGACAAGTGAACCATGCTTTGATATACACTG 12422 |||||||||||||||||||||| | ||||||||||| |||||| ||||||||||| ||| Sbjct 738 AATCATTATTTGGAGCTTCAGACGGTAGAGGACAAGTAAACCATACTTTGATATACCCTG 797 Query 12423 TAGCAATAAAAACACAAATTTCAGAAACGGATTTGATTAATTTCACCGTCATTTTGAATT 12482 | |||||||||| |||||||||||||| | ||||| ||||||||||| ||||| ||||| Sbjct 798 TGGCAATAAAAATACAAATTTCAGAAATTGGTTTGAATAATTTCACCGCCATTTGGAATT 857 Query 12483 GTTTACGAAATAAAAATATTTTTATAGTATATAT 12516 | ||| ||||||| |||||||||| ||||||||| Sbjct 858 GCTTATGAAATAAGAATATTTTTAAAGTATATAT 891 Score = 260 bits (288), Expect = 2e-65 Identities = 177/199 (89%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 12803 GAGGTTGTAGGTATTTTAAGTTCAAAAACACCCCTGAGGATAAGTTCAAATATGTGATGC 12862 || ||||||||||||||||||||||||||| |||| | ||||||||||||||||||||| Sbjct 933 GAAGTTGTAGGTATTTTAAGTTCAAAAACATCCCTTAAAATAAGTTCAAATATGTGATGC 992 Query 12863 CTGCAAGGCAAATACAATAGttttttttCAAGCAACCGTTCCAGTGAAACTGCAGCTCCT 12922 ||||||| ||||||| ||| ||| ||||||||||| |||| ||| |||||||||||||| Sbjct 993 CTGCAAGATAAATACAGTAGCTTTCTTTCAAGCAACTGTTCAAGTAAAACTGCAGCTCCT 1052 Query 12923 TTACTTGATCCTAGATTTGCAGCAGTAGTATCACAGCATAGAGCTTTAATAAAGTCTGGA 12982 |||||||||| || |||||||||||| ||||||||||| |||||||||||| |||| ||| Sbjct 1053 TTACTTGATCATAAATTTGCAGCAGTCGTATCACAGCAAAGAGCTTTAATACAGTCAGGA 1112 Query 12983 ATTCCCCAATCATTAATAG 13001 || ||||||| | |||||| Sbjct 1113 ATACCCCAATTAATAATAG 1131 Score = 208 bits (230), Expect = 1e-49 Identities = 132/143 (92%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 13062 ATATTTTTTCAATTTGCCCACAACTCAATACAACTGGTAGTCGTTCTTTATTTTTTCCAC 13121 ||| ||||||||| ||||||||||| ||||||| |||| |||||||||||||||||||| Sbjct 1228 ATAATTTTTCAATCTGCCCACAACTTAATACAATCGGTACTCGTTCTTTATTTTTTCCAC 1287 Query 13122 TTGACGTTTTTAAAATTTTTCCATCCCAGTGAAGAACACTAGCATTCAAGTCTTGAGTTT 13181 | || |||||||||||||||||||||||||| |||||||||||||||||||||| ||||| Sbjct 1288 TAGAAGTTTTTAAAATTTTTCCATCCCAGTGTAGAACACTAGCATTCAAGTCTTCAGTTT 1347 Query 13182 TGAAAAGTTCTTTGATTTGTTTT 13204 | ||||||||||||||||||||| Sbjct 1348 TTAAAAGTTCTTTGATTTGTTTT 1370 >seq7299 Length=1456 Score = 86.0 bits (94), Expect = 8e-13 Identities = 84/106 (79%), Gaps = 3/106 (3%) Strand=Plus/Minus Query 11629 AAATTTCTCTTACAAAATTTTTATTTATCGTCaaaaaaaGCGAATACAATTTTATTCTTG 11688 |||||| |||| ||||||||||||||| || ||| |||| | |||||| ||||||||| Sbjct 109 AAATTTTTCTTGGAAAATTTTTATTTATGATC-AAATAAGCAAGTACAATATTATTCTTG 51 Query 11689 GAATTGGGGTTAATATGTGTGATTTTTCAATTAATAAAACAGATAG 11734 ||||| | |||| |||| || | | |||||||||||||||| Sbjct 50 AAATTGTGATTAACATGTATG--TCATTGGTTAATAAAACAGATAG 7 >seq9969 Length=2202 Score = 82.4 bits (90), Expect = 1e-11 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 14685 AtttttttttATTCATTTGGAAGCATTTCAGCCCCAGGGAGCAAAGAAATTCGGAAACAT 14744 |||||||||||| ||||| |||| ||| ||||| |||||||| ||||||| ||| || Sbjct 844 ATTTTTTTTTATCAATTTGAAAGCGTTTGAGCCCATGGGAGCAA-GAAATTCAAAAATAT 902 Query 14745 CCATATTAAGGACCACCCTAAT 14766 || | | ||||||||||||||| Sbjct 903 CCCTGTCAAGGACCACCCTAAT 924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 63203822360334