Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_006660.1 Length=20197 Score E Sequences producing significant alignments: (Bits) Value seq126965 93.3 5e-15 seq131631 80.6 3e-11 >seq126965 Length=1238 Score = 93.3 bits (102), Expect = 5e-15 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 16793 TTATGAGAGACGTTTTTGATAGGGTAGAAAAGGATGGTAAACTTTCAGCCAAATCAAAAG 16852 || ||| | |||| ||| || ||||||||| || | |||||||||||||| || |||| Sbjct 1085 TTCTGAAAAACGTCTTTCGTAAGGTAGAAAAAGAAGAAAAACTTTCAGCCAAGTCTAAAG 1026 Query 16853 GGGTCAGGGTCAAAAGTGGTCGATTTGGCGTGGAATGCCCCCTATGTATAT 16903 ||||| || |||||| ||||||| ||| |||||| |||| ||| || || Sbjct 1025 GGGTCGGGTTCAAAATTGGTCGAAATGGGATGGAATACCCCGTATATAGAT 975 Score = 89.7 bits (98), Expect = 7e-14 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 15292 TATCTATGGGGCATTCCACGCCAAATCAACCACTTTTGACCCTGACCCCTTTTGATTTGG 15351 ||| || |||| |||||| ||| || |||| |||||| || ||||||||| || |||| Sbjct 978 TATATACGGGGTATTCCATCCCATTTCGACCAATTTTGAACCCGACCCCTTTAGACTTGG 1037 Query 15352 CTGAAAGTTTACCATCCTTTTCTACCCTATCAAAAACGTCTCTCATAAT 15400 |||||||||| | || ||||||||| || ||| |||| | ||| ||| Sbjct 1038 CTGAAAGTTTTTCTTCTTTTTCTACCTTACGAAAGACGTTTTTCAGAAT 1086 >seq131631 Length=1000 Score = 80.6 bits (88), Expect = 3e-11 Identities = 68/84 (81%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 16819 GAAAAGGATGGTAAACTTTCAGCCAAATCAAAAGGGGTCAGGGTCAAAAGTGGTCGATTT 16878 ||||| || | |||||||||||||| || ||||||||| || |||||| ||||||| | Sbjct 686 GAAAAAGAAGAAAAACTTTCAGCCAATTCTAAAGGGGTCGGGTTCAAAATTGGTCGAAAT 627 Query 16879 GGCGTGGAATGCCCCCTATGTATA 16902 || |||||| |||| |||| ||| Sbjct 626 GGGATGGAATACCCCATATGCATA 603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 64408282807680