Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_006661.1 Length=11186 Score E Sequences producing significant alignments: (Bits) Value seq54153 183 2e-42 seq5029 138 8e-29 seq4543 138 8e-29 seq870 107 1e-19 seq32799 104 2e-18 seq27483 93.3 3e-15 seq102964 82.4 5e-12 seq4461 78.8 7e-11 >seq54153 Length=1407 Score = 183 bits (202), Expect = 2e-42 Identities = 136/158 (86%), Gaps = 1/158 (1%) Strand=Plus/Minus Query 6395 AATCATAGTAGAAAAGTAATTTAAGTTACCGACTACTAAAATAATTTAAAAATTTTGCTT 6454 ||| | |||||||||||||||||||||||| ||||| ||| | | || ||||||||| Sbjct 1405 AATGACAGTAGAAAAGTAATTTAAGTTACCCACTACAGAAAAGACTAAACGATTTTGCTT 1346 Query 6455 ACGTAAGATTTGTCTACTAGCGCCCTCCCCC-CTAAGTAAGCATACATAGAGATTCATCT 6513 |||||||||||||||||||||| |||||||| ||| ||||||| |||||| ||||| || Sbjct 1345 ACGTAAGATTTGTCTACTAGCGGCCTCCCCCTTTAAATAAGCATGCATAGATATTCAGCT 1286 Query 6514 TGATccccccccccTAATGAGCGCTTACGTAATTTATG 6551 ||| ||||| ||||| ||||| |||||||||||||||| Sbjct 1285 TGAACCCCCTCCCCTTATGAGTGCTTACGTAATTTATG 1248 >seq5029 Length=2665 Score = 138 bits (152), Expect = 8e-29 Identities = 102/118 (86%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 6445 AATTTTGCTTACGTAAGATTTGTCTACTAGCGCCCTCCCCCCT-AAGTAAGCATACATAG 6503 ||||| ||||| || |||||||||||||||||||||| ||| || ||||||| ||||| Sbjct 1119 AATTTAAGTTACGCAAAATTTGTCTACTAGCGCCCTCCCGCCTTAAATAAGCATGCATAG 1178 Query 6504 AGATTCATCTTGATccccccccccTAATGAGCGCTTACGTAATTTATGAACAGCCCCT 6561 ||||||||||||| | ||| || || ||||| |||||||||||||||| ||||||||| Sbjct 1179 AGATTCATCTTGAACACCCTCCACTTATGAGTGCTTACGTAATTTATGGACAGCCCCT 1236 >seq4543 Length=2099 Score = 138 bits (152), Expect = 8e-29 Identities = 102/118 (86%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 6445 AATTTTGCTTACGTAAGATTTGTCTACTAGCGCCCTCCCCCCT-AAGTAAGCATACATAG 6503 ||||| ||||| || |||||||||||||||||||||| ||| || ||||||| ||||| Sbjct 20 AATTTAAGTTACGCAAAATTTGTCTACTAGCGCCCTCCCGCCTTAAATAAGCATGCATAG 79 Query 6504 AGATTCATCTTGATccccccccccTAATGAGCGCTTACGTAATTTATGAACAGCCCCT 6561 ||||||||||||| | ||| || || ||||| |||||||||||||||| ||||||||| Sbjct 80 AGATTCATCTTGAACACCCTCCACTTATGAGTGCTTACGTAATTTATGGACAGCCCCT 137 >seq870 Length=1349 Score = 107 bits (118), Expect = 1e-19 Identities = 73/81 (90%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 6437 AATTTAAAAATTTTGCTTACGTAAGATTTGTCTACTAGCGCCCTCCC-CCCTAAGTAAGC 6495 ||||| ||||||||| |||||||||||||||||||||| |||||||| |||||| ||||| Sbjct 1 AATTTTAAAATTTTGTTTACGTAAGATTTGTCTACTAGGGCCCTCCCGCCCTAAATAAGC 60 Query 6496 ATACATAGAGATTCATCTTGA 6516 || || ||||||||| ||||| Sbjct 61 ATGCACAGAGATTCAGCTTGA 81 >seq32799 Length=1351 Score = 104 bits (114), Expect = 2e-18 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 6327 GTTTTAACAACTTATAACCAAACAAAACTGTGTGTGACATTATCGATGCAATTGAACTAT 6386 |||| || | ||||||||||| |||| ||||||| | |||||||| |||| || ||| Sbjct 114 GTTTCAAAATCTTATAACCAAGCAAAGCTGTGTGAGTTGTTATCGATAAAATTTAATTAT 55 Query 6387 CGATCGAGAATCATAGTAGAAAAGTAATTTAAGTTACCGACTACTAAAATAA 6438 || || | ||| | |||||||| ||||||||||||||||||||| ||| || Sbjct 54 CGTTCTAAAATGACAGTAGAAATGTAATTTAAGTTACCGACTACAGAAAAAA 3 >seq27483 Length=1094 Score = 93.3 bits (102), Expect = 3e-15 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 6448 TTTGCTTACGTAAGATTTGTCTACTAGCGCCCTCCCCCCTAAGTAAGCATACATAGAGAT 6507 ||||||||||||||||||||||||||||||| | ||| ||| ||||||| ||||||||| Sbjct 1 TTTGCTTACGTAAGATTTGTCTACTAGCGCCTCCACCCTTAAATAAGCATGCATAGAGAT 60 Query 6508 TCATCTTGA 6516 ||| ||||| Sbjct 61 TCAGCTTGA 69 >seq102964 Length=1132 Score = 82.4 bits (90), Expect = 5e-12 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 4310 TGGATCATTCCATGTCAAATTGACCTACAGTTGGAATTGACCCCTTTTGATATGGATAAA 4369 ||| | |||||||||||||| ||| || ||||| ||||| |||| ||| | || || Sbjct 51 TGGGTGATTCCATGTCAAATCGACTTATAGTTGTAATTGGACCCTAGCGATTTTAATGAA 110 Query 4370 TTTTGTTCAGAAATTTTCTTTTATCATATA 4399 |||| |||| || ||||||||||||||||| Sbjct 111 TTTTTTTCAAAACTTTTCTTTTATCATATA 140 Score = 82.4 bits (90), Expect = 5e-12 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 5062 TATATGATAAAAGAAAATTTCTGACCAAAATTTATCCATATCAAAAGGGGTCAATTCCAA 5121 ||||||||||||||||| || ||| |||||| || | ||| |||| ||||| ||| Sbjct 140 TATATGATAAAAGAAAAGTTTTGAAAAAAATTCATTAAAATCGCTAGGGTCCAATTACAA 81 Query 5122 CTGTAGGTCAATTTGACATGGAATGACCCA 5151 || || ||| |||||||||||||| ||||| Sbjct 80 CTATAAGTCGATTTGACATGGAATCACCCA 51 >seq4461 Length=8093 Score = 78.8 bits (86), Expect = 7e-11 Identities = 63/75 (84%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 6484 CCCTAAGTAAGCATACATAGAGATTCATCTTGATccccccccccTAATGAGCGCTTACGT 6543 || ||| ||||||| |||||||||||| ||||| | ||| ||||| | || |||||||| Sbjct 4097 CCTTAAATAAGCATGCATAGAGATTCAGCTTGA-CTCCCTCCCCTTACAAGTGCTTACGT 4155 Query 6544 AATTTATGAACAGCC 6558 |||||||| |||||| Sbjct 4156 AATTTATGGACAGCC 4170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35624186935600