Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_006940.2 Length=40793 Score E Sequences producing significant alignments: (Bits) Value seq139038 145 2e-30 >seq139038 Length=11747 Score = 145 bits (160), Expect = 2e-30 Identities = 675/1061 (64%), Gaps = 53/1061 (5%) Strand=Plus/Plus Query 24916 TGGTAGGCCAAAACTTCCTTATGTTCGACCGACCAGTTATTAAGCATTGCTGGGGATTCG 24975 |||| |||||||||||| | ||||||||| |||| || | | | || ||||| ||| Sbjct 6931 TGGTGGGCCAAAACTTCTTAATGTTCGACAGACCTGTGCTGTCGAACTGTTGGGGTATCG 6990 Query 24976 AACTCCTGGTAGAAAACATTATAGACACTATGATAGTCGCGTTCCGACATGCCCTCCCGG 25035 ||| || |||| || ||||| ||| | | || | |||| | || | |||| Sbjct 6991 CGATCCCACCCGAGCACATCATCGACACAATGGTCGAGGCCTACCGATACGCGTTGCCGG 7050 Query 25036 GTTCACTGGCCGCGCTGTGTGAGGTTTTAAACATTGACG-CAAGCATGGCTAAGGATAAA 25094 |||| || | || || || || ||||| || || ||| | || || ||||| Sbjct 7051 GTTCGCTCGAGAAACTCTGCGAAGTGCTAAACGTTCCCGTGGAGC-TCGCCAAAGATAAG 7109 Query 25095 CGCGGTAAGGCGCTGATACAGCGATTCAGTAAGCCTACGCCCAAGAACTATAAGATTCGA 25154 ||||||||| |||| ||||| ||| |||| || ||||| ||||| || ||||| || Sbjct 7110 GCGGGTAAGGCGTTGATCCAGCGCTTCTGTAAACCCACGCCTAAGAATTACAAGATACGG 7169 Query 25155 CGTTATACTGCCGATACCCACCCAAAAGAGTGGGCAGAATTTATTGCATACGCAAAAAGC 25214 || || || | || ||||| |||| ||| | ||| | | |||||| || Sbjct 7170 CGCTACACAAAGCAGACGCACCCCGAAGAATGGAAACGCTTTGTAGACTACGCACGGCGC 7229 Query 25215 GACATTACGTCCATGCGTGAAGTGTATAAGAAAATGCCTAAGTGGGGGAATT---CTGAG 25271 || || || || |||||||| | | | | |||| | | |||| | | ||| Sbjct 7230 GATATCACTTCTATGCGTGAGGCCTTCTACCGACTGCCAACAT---GGAACTCCACGGAG 7286 Query 25272 TTCGAAGACCGCGTGCT-GCACTTAGACCAGGTGATTAATGACCGAGGATTTAAGGTTGA 25330 | ||| |||| | | | ||| |||||| | |||||||||||||| ||| | || || Sbjct 7287 ATTGAAAACCGGATCTTAGTGCTT-GACCAGATCATTAATGACCGAGGGTTTTACGTCGA 7345 Query 25331 T-GTGGCATTGGCGGAAGCAGCGATTGAAG-CAGTCACGCGCCATAAAGAAGAGTTACAG 25388 | | ||| | || ||| | | | || || | | ||||| |||| | | Sbjct 7346 TACCGAGCTTGCTCGTTGC-GCGGTACAGGCCATACAGGAG-CATAAGAAAGAACTTAAA 7403 Query 25389 GAAGAAGCCCAACGTAAATATGGC---GGTTCACTAACCGGCAAAGACTTCTTGCCTATT 25445 | || || ||||| ||| ||| || ||||| || ||| |||| Sbjct 7404 GCCGAGGCTATGGCCAAATACGGCTCAGGT---CTTACCGGTGCGGATTTCCTGCCGGCA 7460 Query 25446 TTACAGGAGCTAGCGCCAGCGCACCGCATACACAACGCACAGAAGTCAACACTAAACGAT 25505 || | | ||||| || |||||| | ||| || || |||||| | | || Sbjct 7461 TTGCGCGGTCTAGCCCCGGCGCACACCGTACCGAATGCCCAGAAGGCGGTCTTGCTGGAC 7520 Query 25506 TTGCTGGCGGATGAGGATTTACCGGACGACGCCCGCACTATTATCGAGATGCGTCTCGGG 25565 |||| | ||| ||| | || ||||| |||||| ||| || || ||||| ||||| Sbjct 7521 CTGCTAGAAGATCCAGATCTCCCAGACGAAGCCCGCGTTATCATTGAAATGCGCCTCGGC 7580 Query 25566 GCTGCTTCTACCGCATCGACGAAATACGCGCCGTTGCTGTTAGGCCGTTCTTCAGATGAC 25625 || || || || |||||||| |||||| ||| | | || | || | || | | Sbjct 7581 GCAGCGTCAACGGCATCGACAAAATACAAGCCACTTATCGAGGGTCTGTCCGCCGACGGC 7640 Query 25626 CGCCGCCGTGGTTGCCTGCAATACGGAGGAGCGAAGCGAACATTGCGGTGGGCGGGGAAA 25685 || ||||| ||||| || ||||| || || || |||||||| | | ||||| ||| | Sbjct 7641 CGGCGCCGGGGTTGTCTTCAATATGGTGGCGCCAAGCGAACCCTAAGATGGGCTGGGCGA 7700 Query 25686 GGTTTTCAGCCGCAAAACCTGGCGCGCGGGTATTATCACGACGA-------------TG- 25731 || ||||| ||||| || || || || |||||||| |||||||| || Sbjct 7701 GGCTTTCAACCGCAGAATCTTGCACGTGGGTATTACCACGACGACCCAGAAAAGCCTTGG 7760 Query 25732 ---AACTGGATAG----------GGGTATTGCCGCGTTACTTAAAGGCCGTGCACACCGC 25778 || | | || | |||| | ||||| ||| || | | Sbjct 7761 CCCAAGTCAAAAGACTTGTCACTCGCGATTGAGTCACTACTTCGAGGTAAAGCGGAGAAC 7820 Query 25779 CGTTTTGATGTGGCCAAGCTAACAGCGTCTACCGTCCGAAGCTGCATTAT---CCCGGAA 25835 | | ||| | ||||||||||| || || || |||||| || ||||| ||||| Sbjct 7821 TGCTACGATATCGCCAAGCTAACGGCATCGACGGTCCGATCTTGTATTATTGCAGCGGAA 7880 Query 25836 GCCGGGCGTAAGTTTGTTGTTGCGGATTACTCTAACGTCGAAGGCCGTGGGCTTGCATGG 25895 || | ||| | |||||||| || ||| ||||||| || || |||||| | |||||| Sbjct 7881 GC---GATGAAGCTGGTTGTTGCCGACTACGCTAACGTTGAGGGGCGTGGGTTGGCATGG 7937 Query 25896 CTGGCGGGCGAAGAAACCGCGCTTGATACGTTCCGCGCCGG 25936 || || || ||||| | | ||| || || ||||| ||||| Sbjct 7938 CTTGCAGGTGAAGAGTCTGTGCTCGAGACATTCCGTGCCGG 7978 Score = 132 bits (146), Expect = 1e-26 Identities = 311/459 (68%), Gaps = 8/459 (2%) Strand=Plus/Plus Query 29721 GGGGAAGTTGAAGCGGCTAACGCCGCGGCGAAGACGTCGAAGTGTTTGCAGATTGCATCA 29780 ||| |||| || || | ||| || ||||| |||||| | || || |||||||| || || Sbjct 10320 GGGAAAGTCGACGCCGTTAATGCGGCGGCCAAGACGGCTAAATGCTTGCAGATAGCTTCC 10379 Query 29781 GGCGCCGTGTATGT-ATCGGGGCCAGACGGAGAAGCTACCAAAGAATGGGAGAAAGTGCA 29839 || ||||| ||||| | || ||| ||||| || | || || |||||| | || Sbjct 10380 GGTGCCGTTTATGTGACCGACGCC-GACGGTGAGCCGACAGGTGACTGGGAGCTTATTCA 10438 Query 29840 CGATACGAAACTGGATGCGCTCGAGTCCATTGTAGAGGAGTTACAGGGTGCGCCGTTGTT 29899 | ||| ||||| ||||||||||| ||| || ||| | | |||||||| |||| Sbjct 10439 TAACGAGAAGCTGGACGCGCTCGAGTCTATTTATGAAGAGCTCAACGGTGCGCCACTGTT 10498 Query 29900 GGTGGCCTATCAGTTCAAACACGAACTGGAGCGCATCCTTAAGCGATTCCCGCAGGCTCA 29959 ||||||||| | | || || | ||| |||||||| ||| |||||| |||| Sbjct 10499 AGTGGCCTATTACTATCGCCATGACCGGGAACGCATCCTGAAGAAATTCCCCGAGGCCGT 10558 Query 29960 GGCCTTTTCCAAAGGTGCTAAAGGTAATAAGC-AGATGGAATCTTGGAACCGCGGGGAAA 30018 ||| | ||||||| || | || || | || || ||||||| ||| | | Sbjct 10559 GGCACTGGGCAAAGGT-AAAACCGCAACCCGCAATATCGAGCTGTGGAACCAAGGGAAGA 10617 Query 30019 TCGAGATTTTGTGCGTGCACCCTG-CATCGGCGGGCCATGGTTTGAATTTACAGGACGGC 30077 || || | | | ||||| | || || |||| || || | || || || |||||| Sbjct 10618 TCCCTATGCTATTGGCTCACCCGGCCAGCGCCGGG-CACGGCCTTAACTTGCAAGACGGC 10676 Query 30078 GGGCATCATCTGG-CGTTTATTTCGCAAGGCTGGAACCTGGAGCACTATTTGCAGGTTGT 30136 || || ||||||| ||||| | | | | |||||| |||| |||||| |||| | || Sbjct 10677 GGACACCATCTGGCCGTTTTTAGTGATACG-TGGAACTTGGAATACTATTCGCAGATCGT 10735 Query 30137 CGAGCGTATAGGTCCTGTACGCCAGAAACAGGCTGGCCA 30175 ||| || ||||| || || || || | ||||| ||||| Sbjct 10736 CGAACGAATAGGGCCAGTGCGACAACATCAGGCGGGCCA 10774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130200660850260