Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq43985 242 5e-59 >seq43985 Length=4878 Score = 242 bits (268), Expect = 5e-59 Identities = 530/783 (68%), Gaps = 23/783 (3%) Strand=Plus/Minus Query 62568 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 62627 || ||| |||| || || || | || | || ||||| | |||||| || || |||||| Sbjct 2136 GAGCCTTCATAAGTTTCATAAGTACCATATTTTTCAGCCAATTCACAGCTAGCTTCTAAT 2077 Query 62628 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTA-GATCTTGTGCTTCCAGGCTATC 62686 || || || || || ||||| || || | | ||||| || | || | | ||| || Sbjct 2076 GCGCCATAGTACATAGTTTCAAAAATTTGTTGATTTAAGAGCGCA-GCCTGCTCGCTCTC 2018 Query 62687 AAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGG 62746 |||| ||| | || || || ||||| || || ||||| | ||||| || ||||| Sbjct 2017 GTATGGGTAACGCATAAGGATTAAAGCGTCTGCAAAACCTTGTATGCCAATGCCAATAGG 1958 Query 62747 TCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 62806 | |||||| |||||| | | || || || | ||||||| ||| || || || || Sbjct 1957 GCGATGTCTGAAATTAGACTTCTTTGCCTCGGGCAATGGATAATGATTTATGTCGATGAT 1898 Query 62807 TTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCA---GTTTGAGAAAATC 62860 |||||| ||||| | | ||| | | | | ||| ||||||| | || |||||| Sbjct 1897 TTTATTTAGATTACGTGTTACAGTCATTGTAACC---TCCTTCAAACGCTT---AAAATC 1844 Query 62861 AAATCGCCCATCTATT---ACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGC 62917 | ||| | |||||||| || | |||| ||||| | ||||||||| || Sbjct 1843 GTACGTTTTTTCTGGTGTAACAAACATATTGAGTGCAATCGATGCTAAATTACAAACAGC 1784 Query 62918 TACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGT 62977 || |||| | | | ||| | | ||| || || || | ||||||||| || ||||| Sbjct 1783 CACTTCATCTGGTGCTGAATACTCAACTATTTCTGTACATAAATTACTACATTTAATAGT 1724 Query 62978 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGT 63037 || | ||||||||||||||||||| | ||||| |||||||| || || || |||| || Sbjct 1723 GCCAATATTTTGTTGATTACTCTTTCTATTACATGCATCCTTGTACAGCATATATGGTGT 1664 Query 63038 ACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGAC-TCGAGCCTTTATTATAG 63096 || || || | || ||||| ||||| || ||| | ||| | | || |||| | | Sbjct 1663 GCCTGTCTCTACTTGCGATTCAATAATGGCAAACCA-AAGACTTTGTGCTTTTACTTT-- 1607 Query 63097 ATTTGTATCTCCTTTCTCTT--TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCA 63154 || || | | | |||| || ||| ||||| ||| ||| || || || ||||| Sbjct 1606 CTTATTAGCGCGTCCGTCTTGCTCATATTTAGTATATAATTTTTCAAATTCATCGCCCCA 1547 Query 63155 AACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT 63214 || | | ||| || ||||| | | |||||||| | |||||| ||| | | | | | Sbjct 1546 TACCTCATGCAAGCCGGGACACTTGTGTGGACACATAAGCGACCAATCTTCATTAGCTTC 1487 Query 63215 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 63274 || ||||||||||| ||||| |||||||| | || ||||| |||||| | |||||| Sbjct 1486 AACACGTTTCATAAAAAGATCTGGAATCCATAATGCATAAAATAAATCTCTAGCTCTATG 1427 Query 63275 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63334 || || | || ||||| || || | ||| | || | | ||||| | |||||| || Sbjct 1426 CTCTTCTGTGCCAGTATTTTTCTTTAAATCCAAAAATTCAAATATATCTGCATGCCATGG 1367 Query 63335 TTC 63337 ||| Sbjct 1366 TTC 1364 Score = 143 bits (158), Expect = 3e-29 Identities = 261/380 (69%), Gaps = 3/380 (1%) Strand=Plus/Minus Query 62070 TAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGAT 62129 |||||||| ||| || || ||| |||| | || || |||| ||| ||||| | ||| Sbjct 2681 TAAAAATGTATAGATGTAAGCTTGCCATAATTTGGTTCAGCTACATGAATATTAAACGAT 2622 Query 62130 TGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGA 62189 ||||||||||||||||| || || | || || ||||| || || | ||||| | Sbjct 2621 TGACTTTGATCGATGAATGCGCCACGATCGGCTGCCATCTTCATTGTAGTCTTCACCGAT 2562 Query 62190 ATTTCCCAAATAGTTTTATAAACT-CGCTTAATATCTTCTGGAAGGTTTGTATTC--TGA 62246 || ||||||| ||||| |||| | | | || | | | | | || || || | || Sbjct 2561 ATCTCCCAAACTGTTTTGTAAAGTTCACGTATTTTTGTTGGTATGGATTCAATACCTTGT 2502 Query 62247 ATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCG 62306 || || |||| || ||||| || || || || |||| ||| || || Sbjct 2501 ATTGAACCACGGCTTGTTATAATTTTAGATTTCATATCTTCATCCCACAAACCCAATTCA 2442 Query 62307 GTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGA 62366 || | | | | | | ||| ||||||| ||||||||||| || || | ||| | ||| Sbjct 2441 GTGAGATCGCGTAACAAATGATGATTAACAACTTGAAATTCACCCGAAAGTACGCGTCGA 2382 Query 62367 GTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTT 62426 | |||||||| || || ||||| | ||| |||||||| |||| |||||| |||||| Sbjct 2381 TTATAAATATTTGAAGTGTAGGGTTCAAACGATTCATTATTGCCCATAATTTGTGCAGTT 2322 Query 62427 GATGCAGTCGGCATAGGTGC 62446 |||||||| |||||||| || Sbjct 2321 GATGCAGTGGGCATAGGGGC 2302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621864471045360