Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_007023.1 Length=180500 Score E Sequences producing significant alignments: (Bits) Value seq2788 269 3e-67 seq14905 122 1e-22 seq38357 98.7 1e-15 seq2551 96.9 4e-15 >seq2788 Length=136445 Score = 269 bits (298), Expect = 3e-67 Identities = 374/518 (72%), Gaps = 18/518 (3%) Strand=Plus/Minus Query 41800 CCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTTGCGTAGTG 41859 |||||||| |||||| | || ||||| || || || || ||||| | ||||||| || Sbjct 19671 CCTACGCCAATTATGTCCGGCGTGCGCACCCCGACTCGCCAGTTCAGCTCTTGCGTACTG 19612 Query 41860 ATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTCT---GCGATCGTGAAG 41916 || || | || || |||| || | || || ||||| || |||||||| Sbjct 19611 ATCGAGTGCGGCGACAGCCTGGACTCCATCAACGCG---ACCTCCAGCGCCATCGTGAAA 19555 Query 41917 TATATTTCACAACGCGCGGGTATCGGTGTTAATGCTGGACACATTCGCGCAATGGGTTCT 41976 || ||||||| ||||| |||||||| | || ||||| | ||| || || ||||| Sbjct 19554 TACGTTTCACAGCGCGCAGGTATCGGCATCAACGCTGGCCGCATCCGTGCGCTGGGTAGC 19495 Query 41977 AAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTGATCCCGTTCTGGAAACATATTCAG 42036 || || || ||||||||| | ||||| ||| |||||||||| || || | ||| Sbjct 19494 CCGATTCGCGGCGGTGAAGCATTCCATACCGGCTGTATCCCGTTCTATAAGCACTTCCAG 19435 Query 42037 ACAGCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGCAACGTTGTATTAT 42096 || |||||||||||||| || || || ||||| || || |||||||| || ||| || Sbjct 19434 ACGGCGGTTAAATCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCTGCGACCCTGTTCTAC 19375 Query 42097 CCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGTGTTGAG 42156 ||||| ||||| |||||||||||| |||||||||||||||||||||| |||||||| Sbjct 19374 CCGATGTGGCACCTGGAAGTTGAAAGCCTGCTGGTTCTGAAAAACAACCGTGGTGTTGAA 19315 Query 42157 AATAACCGTATTCGTCACCTGGATTATGGCGTTCAGCTTAACGATTTGATGTATAAGCGT 42216 ||||| |||||||| |||| || ||||| ||| | ||| | |||||||| ||||| Sbjct 19314 GGCAACCGCGTTCGTCACATGGACTACGGCGTGCAGATCAACAAACTGATGTATCAGCGT 19255 Query 42217 TTAATCAATAACGATTACATCACACTGTTCAGCC---CTGACGTTGCAAATGATCGCCTG 42273 | | || || ||||||| |||||||||| |||||| ||| | ||||| Sbjct 19254 CTGGTTAAAGGCGGCGACATCACTCTGTTCAGCCCGTCTGACG-TGC-----CTGGCCTG 19201 Query 42274 TATGATGCTTTCTATCAAGCTGATCAGACTGAGTTCGA 42311 || || || |||| || || |||||| |||||||| Sbjct 19200 TACGACGCGTTCT-TC--GCCGATCAGGACGAGTTCGA 19166 Score = 86.0 bits (94), Expect = 7e-12 Identities = 135/189 (71%), Gaps = 6/189 (3%) Strand=Plus/Minus Query 43579 TTCGAAACTTTGACTGAAAAACAACTGTCATTCTTCTGGCGACCGGAAGAAGTGGATCTG 43638 ||||||| ||| ||||| || ||||| ||||||||||| ||||||||||| || | Sbjct 17781 TTCGAAAAACTGATCGAAAAGCAGCTGTCCTTCTTCTGGCGTCCGGAAGAAGTTGACGTT 17722 Query 43639 TCGATCGACCGTATGCAGTATGCA-AAAATGCCGGAACACGAGAAAATCATTTT--TGAT 43695 | |||||||| | | | || ||||||| || || ||| |||||| ||| Sbjct 17721 GCCCGTGACCGTATCGACT-TCCAGGGTCTGCCGGAGCATGAAAAACACATTTTCCTGA- 17664 Query 43696 TCTAACCTGCAATATCAAACCCTGTTAGATACCATTCAGGGACGTGGCCCTAACCTGGCG 43755 |||||| | ||||| || ||| | || | |||||||| ||| |||||||| ||||| Sbjct 17663 -GCAACCTGAAGTATCAGACGCTGCTGGACTCGATTCAGGGCCGTAGCCCTAACGTGGCG 17605 Query 43756 TTTCTCCCG 43764 | || ||| Sbjct 17604 CTACTGCCG 17596 >seq14905 Length=119551 Score = 122 bits (134), Expect = 1e-22 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 51899 GAGTTTCAACCGACTGTTAAAGTTGAAGGTGGACAGCACCTAAACGTGAATGTGCTACGT 51958 ||| |||| || || ||| || ||||| || ||||| || ||||| || || | ||| Sbjct 42253 GAGATTCAGCCAACGGTTCGCGTAGAAGGGGGGCAGCATCTTAACGTTAACGTCATGCGT 42312 Query 51959 CGCGAAACCCTGGAAGATGCTGTGAAACATCCTGAGAAGTACCCACAGTTAACGATCCGC 52018 || || || || |||||||| | ||||||||||||||||| || ||||| || ||||| Sbjct 42313 CGTGAGACGCTCGAAGATGCGATAAAACATCCTGAGAAGTATCCTCAGTTGACTATCCGT 42372 Query 52019 GTTTCAGGTTATGCAGTTCGCTTTAATGCACTGACTCCAGAACAACAGCGCGACGTTATC 52078 || || || || || || || ||||| | |||| || ||||| |||| ||||| ||| Sbjct 42373 GTCTCGGGGTACGCCGTGCGTTTTAACTCGTTGACGCCGGAACAGCAGCAGGACGTGATC 42432 Query 52079 GCCAGAACCTTTACGGAAAGCATGTAA 52105 | | || || || | ||| ||||| Sbjct 42433 ACTCGTACTTTCACTCAGAGCCTGTAA 42459 >seq38357 Length=36386 Score = 98.7 bits (108), Expect = 1e-15 Identities = 125/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 156727 AAGCCCTGATGACTCGCATCGATAGCCTACGCGGTGTTAAAGCCAGTGTAGCCCCGATCC 156786 |||| ||||||| || |||| | || ||| || |||||| | || || ||||||| Sbjct 28126 AAGCGTTGATGACCCGTATCGCCCGACTCGACGGGGTAAAAGCCCGCGTCGCGCCGATCC 28185 Query 156787 TGTACACGGAAGGTGCATTCGGTGTTCGTCTGAATCCTGATGATGAAATCCTGGAACTGT 156846 | || | ||| ||||| | ||| || || |||| | |||||||| ||| ||| | | Sbjct 28186 TTTATATGGAGGGTGCCTGCGGCGTGCGCTTGAAAGCCGATGATGACATCAGCGAAATCT 28245 Query 156847 TCAAAAATGGGCGTAGCTCTATCAGTCTGGGTTATATCGGATTGCATGAAAC 156898 ||||||| ||||| ||| ||| |||||||||||||| |||| ||||| Sbjct 28246 TCAAAAACGGGCGGGCCTCCATCTCGCTGGGTTATATCGGCGTGCACGAAAC 28297 Score = 93.3 bits (102), Expect = 5e-14 Identities = 208/307 (68%), Gaps = 4/307 (1%) Strand=Plus/Plus Query 155730 AACGAGAACGCGAACAAACAC-GCAAGGGTATTCCCGACACAGCGCAATTTGCTGGCGGG 155788 || || ||||| || || || |||| | |||||| ||||||||| | |||||||||| Sbjct 27082 AATGAAAACGCCAATAAGGACAGCAAAGTCATTCCC-ACACAGCGCGACCTGCTGGCGGG 27140 Query 155789 TATTGTAGCGAAGCATTTCGCCCGTAATCATATCCTTCCGAAACATATCGTAGAAGCGCA 155848 ||||||||||| || | || ||| | ||||| || || | | || || || Sbjct 27141 GATTGTAGCGAAACACTATGCGCGTCAGCATATTCTGCCTCGTGACGTGGTGCTGGCCCA 27200 Query 155849 TGACTCCGGCGACATCCACTATCATGATCTGGATTACAGCCCG-TTCACGCCATACACAA 155907 || |||||| || || ||||| ||||| || ||| ||| || | | || | | Sbjct 27201 CGAGCGCGGCGAAATTCATTATCACGATCTCGACTACTCACCGTTTTTCCCGATGTTC-A 27259 Query 155908 ACTGCTGTCTGGTGGATTTGAAAGGTATGCTGGCTAATGGCTTCAAGATGGGTAACGCAG 155967 ||||| || | || | ||||| ||| || ||| || || || ||||| ||||| | Sbjct 27260 ACTGCATGCTCATCGACCTCAAAGGCATGTTGAATAAAGGTTTTAAAATGGGCAACGCGG 27319 Query 155968 ACATCGAACCCCCGAAATCAATCGGTGTTGCGACTGCTCTTATGGCACAGATCACCGCAC 156027 | ||||| | ||||| || ||| ||||| || | | ||||||||| | ||| | Sbjct 27320 AAATCGATACGCCGAAGTCCATCTCCACCGCGACCGCCGTCACGGCACAGATTATCGCTC 27379 Query 156028 AGATTGC 156034 || |||| Sbjct 27380 AGGTTGC 27386 Score = 87.8 bits (96), Expect = 2e-12 Identities = 209/313 (67%), Gaps = 10/313 (3%) Strand=Plus/Plus Query 156174 ACTGAAAAAGATGTGTTT-GATGCTTTCCAATCGTATGAATACGAAGTTAACACGCTGCA 156232 || |||||||| ||| | || || || || ||| ||||| || ||||| ||||| || Sbjct 27564 ACAGAAAAAGA-GTGCTACGACGCCTTTCAGTCGCTGGAATATGAGGTTAATACGCTTCA 27622 Query 156233 TACTGCCAACGGACAAACACCTTTCGTTACTATTACTTTCGGTACTGGTACGGGAATGTT 156292 || |||||||| || || || || || || || || ||| ||||| |||| Sbjct 27623 CACCGCCAACGGCCAGACGCCGTTTGTGACCTTTGGCTTTGGTCTGGGTACC----TGTT 27678 Query 156293 TGAA----CGGATGATCCAGAAAGCTATTCTGAAAAACCGTATCCGTGGCCTGGGTAAAA 156348 | | ||| |||| || ||| | |||||| ||||||||| || | || |||| Sbjct 27679 GGCAAGCGCGGCTGATTCAAAAATCGATTCTGCGCAACCGTATCGCCGGATTAGGAAAAA 27738 Query 156349 AAGGTATTACTCCGGTATTCCCTAAACTGGTTATGTTCATGGAAAAAGGCATTAACCTTG 156408 | ||| || | || || || ||||||||| | ||| | ||||| || | | Sbjct 27739 ATCGTAAAACGGCCGTGTTTCCCAAACTGGTTTTCGCCATTCGCGACGGCATAAATCATA 27798 Query 156409 ATCCAGAGGATCGCAACTATGACATCAAACAACTGGCTCTGGAATGCGCTTCAAAACGTA 156468 | | | || ||| |||||||||||||| || || || ||||| || || |||| Sbjct 27799 AGGCGGCCGACGCCAATTATGACATCAAACAGCTCGCCCTCGAATGTGCCAGCAAGCGTA 27858 Query 156469 TGTACCCAGATAT 156481 |||| || ||||| Sbjct 27859 TGTATCCCGATAT 27871 >seq2551 Length=53185 Score = 96.9 bits (106), Expect = 4e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 51923 GAAGGTGGACAGCACCTAAACGTGAATGTGCTACGTCGCGAAACCCTGGAAGATGCTGTG 51982 ||||| || ||||| || ||||| || || | ||||| | ||| || || || Sbjct 36934 GAAGGCGGTCAGCATCTGAACGTTAACGTAATGAACCGCGAGATGCTGCTGGAGGCCATG 36993 Query 51983 AAACATCCTGAGAAGTACCCACAGTTAACGATCCGCGTTTCAGGTTATGCAGTTCGCTTT 52042 || |||||||||| | ||| ||| | || |||||||||||||| ||||| || ||||| Sbjct 36994 GAAAATCCTGAGAAATTCCCTCAGCTGACTATCCGCGTTTCAGGCTATGCGGTACGCTTC 37053 Query 52043 AATGCACTGACTCCAGAACAACAGCGCGACGTTATCGCCAGAACCTTTACGGAAAGCATG 52102 || |||| || |||||| |||| ||||| || || | |||||||| ||| || Sbjct 37054 AACTCACTAACCAAAGAACAGCAGCAGGACGTGATTACCCGTACCTTTACTAAAACGCTG 37113 Query 52103 TAA 52105 ||| Sbjct 37114 TAA 37116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576468310353600