Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq119770 114 1e-20 seq123102 107 2e-18 seq21876 102 7e-17 seq138766 89.7 4e-13 seq88566 89.7 4e-13 >seq119770 Length=1537 Score = 114 bits (126), Expect = 1e-20 Identities = 156/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 23980 AGCCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAG 24039 || ||| |||||||||| | || || |||||| ||||||| || | || ||| | || | Sbjct 1103 AGACAACCAAAATGCAAATTTTCGTCAAAACACTAACTGGCAAGACCATCACCTTAGAGG 1044 Query 24040 TCGAGGCCAAC-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATA 24098 | ||| ||| | |||||||| || | |||||| |||||| || |||||||| || Sbjct 1043 TGGAG-CCATCTGACACCATTGAAAATGTCAAAGCTAAGATTCAGGATAAAGAAGGTATT 985 Query 24099 CCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTC 24158 || || |||||||| | || |||| || ||| || ||| | ||||||| | | | Sbjct 984 CCACCAGATCAACAACGTCTTATTTTCGCCGGAAAACAATTAGAAGATGGACGTACTCTA 925 Query 24159 AGCGATTATAACATTCAAAAAGAATCTACAATTCA 24193 ||| || || |||||||||||||| ||| |||| Sbjct 924 TCCGACTACAATATTCAAAAAGAATCAACACTTCA 890 >seq123102 Length=1410 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| |||||||| ||||| ||| | || || | ||||| || | Sbjct 816 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACTATCACATTGGAAGTTGAACCTTCG 757 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||||||| | || ||| ||| ||| || || |||||||| || || || ||| Sbjct 756 GATACCATCGAGAACGTTAAAGCAAAAATTCAAGATAAGGAAGGCATTCCCCCAGACCAA 697 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | | |||| || ||||||||| || || |||| | | | |||||| ||| Sbjct 696 CAACGTTTAATTTTCGCCGGCAAGCAGCTTGAGGATGGACGCACATTATCCGATTACAAC 637 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||||||| ||||| ||| |||| || || Sbjct 636 ATTCAAAAGGAATCAACACTTCACTTGGT 608 >seq21876 Length=2391 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || |||||||| || ||||| || | || ||| | ||||| ||| | Sbjct 512 ATGCAAATCTTCGTAAAAACTTTGACTGGCAAGACTATCACCCTGGAAGTTGAGCCGTCT 571 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || ||||| ||||| || || || || || ||||| Sbjct 572 GACACCATCGAAAACGTTAAGGCTAAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAG 631 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | | || | || |||||||||| | ||||||| | | | | | |||||| ||| Sbjct 632 CAGCGTTTAATCTTCGCCGGCAAGCAATTGGAAGATGGCCGTACCTTGTCCGATTACAAC 691 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||| || ||||| || ||||||| || Sbjct 692 ATTCAGAAGGAATCAACGCTTCATTTGGT 720 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || |||||||| || || || ||| | || || | ||||||||| | | Sbjct 740 ATGCAAATCTTCGTAAAAACTTTGACAGGGAAAACTATCACTTTAGAAGTCGAGCCATCC 799 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || ||| | |||||| |||||| ||||| ||||| || ||||| |||||| Sbjct 800 GACACTATTGAGAACGTCAAAGCTAAGATTCAGGACAAGGAAGGTATTCCTCCAGATCAA 859 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 || | | || | || ||||||||||| || || Sbjct 860 CAACGTTTAATCTTCGCTGGCAAGCAACTGGAGGA 894 >seq138766 Length=1258 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 23989 AAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCA 24048 |||||||| | || ||||||||| |||| |||||| | || || | || || ||| | Sbjct 638 AAATGCAAATCTTCGTAAAAACACTAACGGGAAAAACAATAACACTGGAGGTGGAGCCAT 697 Query 24049 ACGACACCATCGAGCAAGTCAAA--CAAAAGATTACCG-ACAAAGAAGGCATACCTCCCG 24105 ||| | | ||| | ||||| ||||| ||| | | ||||| || || || || | Sbjct 698 CCGAAAATGTTGAGAATGTCAAGGCCAAAA---TACAGGATAAAGAGGGGATTCCACCAG 754 Query 24106 ATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATT 24165 |||| ||||||||||| | | || ||||| || || |||| |||| | ||||| Sbjct 755 ATCAGCAGAGACTGATCTTTGCTGGTAAGCAGCTTGAGGATGGAAGAACACTTTCCGATT 814 Query 24166 ATAACATTCAAAAAGAATCTACAATTCAT 24194 | || || || ||||| |||||||| ||| Sbjct 815 ACAATATACAGAAAGAGTCTACAATCCAT 843 >seq88566 Length=1870 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23989 AAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCA 24048 |||||||| | || || ||||| | || || ||| | || || | || || || | Sbjct 458 AAATGCAAATATTCGTTAAAACCCTTACGGGTAAAACCATCACACTTGAGGTTGAACCTT 399 Query 24049 ACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATC 24108 ||| || || || || |||||| |||||| || || ||||| || || || |||| Sbjct 398 CCGATACTATTGAACATGTCAAAGCCAAGATTCAAGATAAGGAAGGAATTCCACCAGATC 339 Query 24109 AACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATA 24168 | || | | |||| | ||||| || || ||||| | ||| | | ||||||| Sbjct 338 AGCAACGTTTAATTTTTGCTGGCAAACAGCTGGAAGACGGACGAACTTTGGGTGATTATA 279 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||||| |||||||| | |||||||| || | | |||||||| Sbjct 278 ACATTCAAAAGGAATCTACGTTGCATTTAGTATTGCGTCTCAGAGGAGG 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429207420512130