Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq88566 114 1e-20 seq21876 113 4e-20 seq123102 111 1e-19 seq43985 100 3e-16 seq138766 82.4 7e-11 >seq88566 Length=1870 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||||| |||||||| | || || |||||||||||||| ||||| | || || || Sbjct 241 ACGCAATACTAAATGCAACGTAGATTCCTTTTGAATGTTATAATCACCCAAAGTTCGTCC 300 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 ||| || ||||| ||||| || | |||||||| ||||| || || || |||||||| || Sbjct 301 GTCTTCCAGCTGTTTGCCAGCAAAAATTAAACGTTGCTGATCTGGTGGAATTCCTTCCTT 360 Query 131139 GTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAA 131197 || ||| | | || |||| || || | |||||||| | || | || | || | Sbjct 361 ATC-TTGAATCTTGGCTTTGACATGTTCAATAGTATCGGAAGGTTCAACCTCAAGTGTGA 419 Query 131198 CGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||||||||| || || ||||| ||||| || ||||| Sbjct 420 TGGTTTTACCCGTAAGGGTTTTAACGAATATTTGCAT 456 >seq21876 Length=2391 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||||| || ||||| | || || ||||| ||||||||||||||| | Sbjct 738 CCACCACGTAGACGCAGGACCAAATGAAGCGTTGATTCCTTCTGAATGTTGTAATCGGAC 679 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || | |||||||| ||| |||||||||||||||| || || || Sbjct 678 AAGGTACGGCCATCTTCCAATTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGGGGA 619 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| || ||| | | || | || || | | ||| | Sbjct 618 ATTCCCTCCTTGTCCTGGATCTTAGCCTTAACGTTTTCGATGGTGTCAGACGGCTCAACT 559 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || || | |||||||||||| || ||||| Sbjct 558 TCCAGGGTGATAGTCTTGCCAGTCAAAGTTTTTACGAAGATTTGCAT 512 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 |||||| || |||||||| ||| |||||||||| || || || ||||| || ||||| || Sbjct 895 GTCCTCCAGTTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGAATACCTTCCTT 836 Query 131139 GTCGGTGATTTTCTGCTT-GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAA 131197 ||| ||| | | |||| || | ||| | ||| |||| | ||||| || | || | Sbjct 835 GTCC-TGAATCTTAGCTTTGACGTTCTCAATAGTGTCGGATGGCTCGACTTCTAAAGTGA 777 Query 131198 CGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||||| || || | |||||||||||| || ||||| Sbjct 776 TAGTTTTCCCTGTCAAAGTTTTTACGAAGATTTGCAT 740 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || ||||| | || ||||||||||| || ||||| || | Sbjct 510 CCACCACGTAGACGTAGGACCAAATGGAGCGTTGACTCCTTTTGGATATTGTAGTCAGAC 451 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || | |||||||| ||| |||||||||||||||| || || || Sbjct 450 AAGGTACGGCCATCTTCCAATTGCTTGCCAGCGAAGATTAAACGCTGCTGATCTGGGGGA 391 Query 131128 ATTCCTTCTTT 131138 ||||| || || Sbjct 390 ATTCCCTCCTT 380 >seq123102 Length=1410 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| |||||| || || || | || || ||||||||||||||||||||| Sbjct 590 CCACCCCGCAGACGCAGAACCAAGTGAAGTGTTGATTCCTTTTGAATGTTGTAATCGGAT 649 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| ||| | |||||||| || ||||| || || Sbjct 650 AATGTGCGTCCATCCTCAAGCTGCTTGCCGGCGAAAATTAAACGTTGTTGGTCTGGGGGA 709 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| || || ||| ||| ||||| | | | ||| | ||||| | | || | Sbjct 710 ATGCCTTCCTTATC-TTGAATTTTTGCTTTAACGTTCTCGATGGTATCCGAAGGTTCAAC 768 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||||| || || | ||||| || || || ||||| Sbjct 769 TTCCAATGTGATAGTTTTGCCAGTCAATGTTTTAACAAATATTTGCAT 816 Score = 84.2 bits (92), Expect = 2e-11 Identities = 98/131 (75%), Gaps = 1/131 (1%) Strand=Plus/Plus Query 131026 ACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCT 131085 |||||||| | || || ||||| ||||| || |||||| || ||||| |||||| Sbjct 836 ACTAAATGCAATGTAGATTCCTTCTGAATATTATAATCGGACAATGTGCGTCCATCCTCT 895 Query 131086 AGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTG 131145 | ||| ||||| ||| | || ||||| || || || || |||||||||||||| || || Sbjct 896 AACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTTATC-TTG 954 Query 131146 ATTTTCTGCTT 131156 | ||| |||| Sbjct 955 AATTTTAGCTT 965 >seq43985 Length=4878 Score = 100 bits (110), Expect = 3e-16 Identities = 128/173 (74%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 145617 TATTGACGGCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTG--TATTG 145674 |||||| || ||||| || ||||||||||| ||| || || | || |||| || | Sbjct 1817 TATTGAGTGCAATCGATGCTAAATTACAAACAGCCACTTCATCTG-GT-GCTGAATACTC 1760 Query 145675 TACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTT 145734 || || || | || ||||| |||||||| || || || | |||||| |||||||| || Sbjct 1759 AACTATTTCTGTACATAAATTACTACATTTAATAGTGCCAATATTTTGTTGATTACTCTT 1700 Query 145735 CCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787 || || || || |||||||| ||||| || ||| ||| ||||| || |||| Sbjct 1699 TCTATTACATGCATCCTTGTACAGCATATATGGTGTGCCTGTCTCTACTTGCG 1647 >seq138766 Length=1258 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTC 131081 ||| || | ||| || || ||||| || || || ||||||||| | || | || Sbjct 852 CAGAACAAGATGGATTGTAGACTCTTTCTGTATATTGTAATCGGAAAGTGTTCTTCCATC 793 Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 ||| |||||||| || || |||| | | |||||| || || || || || ||||| || Sbjct 792 CTCAAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCTGGTGGAATCCCCTCTTTATC 733 Query 131142 GGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 ||||| ||||| | ||| ||| | |||| | ||| | || | || | || Sbjct 732 CTGTATTTTGGCCTTGACATTCTCAACATTTTCGGATGGCTCCACCTCCAGTGTTATTGT 673 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| || ||||| ||||||||||| || ||||| Sbjct 672 TTTTCCCGTTAGTGTTTTTACGAAGATTTGCAT 640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471192406352640