Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq43985 246 4e-60 >seq43985 Length=4878 Score = 246 bits (272), Expect = 4e-60 Identities = 532/784 (68%), Gaps = 25/784 (3%) Strand=Plus/Minus Query 62423 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 62482 || ||| |||| || || || | || | || ||||| | |||||| || || |||||| Sbjct 2136 GAGCCTTCATAAGTTTCATAAGTACCATATTTTTCAGCCAATTCACAGCTAGCTTCTAAT 2077 Query 62483 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTA-GATCTTGC-GCTTCCAGGCTAT 62540 || || || || || ||||| || || | | ||||| || | || || | | ||| | Sbjct 2076 GCGCCATAGTACATAGTTTCAAAAATTTGTTGATTTAAGAGC--GCAGCCTGCTCGCTCT 2019 Query 62541 CAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAG 62600 | |||| ||| | || || || |||||||| || ||||| | ||||| || |||| Sbjct 2018 CGTATGGGTAACGCATAAGGATTAAAGCGTCTGCAAAACCTTGTATGCCAATGCCAATAG 1959 Query 62601 GTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAA 62660 | | |||||| |||||| | | || || || | ||||||| ||| || || || | Sbjct 1958 GGCGATGTCTGAAATTAGACTTCTTTGCCTCGGGCAATGGATAATGATTTATGTCGATGA 1899 Query 62661 TTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCA---GTTTGAGAAAAT 62714 ||||||| ||||| | | ||| | | | | ||| ||||||| | || ||||| Sbjct 1898 TTTTATTTAGATTACGTGTTACAGTCATTGTAACC---TCCTTCAAACGCTT---AAAAT 1845 Query 62715 CAAATCGCCCATCTATT---ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGG 62771 | | ||| | |||||||| || | ||||| ||||| | ||||||||| | Sbjct 1844 CGTACGTTTTTTCTGGTGTAACAAACATATTGAGTGCAATCGATGCTAAATTACAAACAG 1785 Query 62772 CTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGG 62831 | || |||| | | | ||| | | ||| || || || | ||||||||| || || | Sbjct 1784 CCACTTCATCTGGTGCTGAATACTCAACTATTTCTGTACATAAATTACTACATTTAATAG 1725 Query 62832 TTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAG 62891 | || | ||||||||||||||||||| | ||||| |||||||| || || || |||| | Sbjct 1724 TGCCAATATTTTGTTGATTACTCTTTCTATTACATGCATCCTTGTACAGCATATATGGTG 1665 Query 62892 TACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGAC-TCGAGCCTTTATTATA 62950 | || || || | || ||||| ||||| || ||| | ||| | | || |||| | | Sbjct 1664 TGCCTGTCTCTACTTGCGATTCAATAATGGCAAACCA-AAGACTTTGTGCTTTTACTTT- 1607 Query 62951 GATTTGTATCTCTTTTCTCTT--TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCC 63008 || || | | | |||| || ||| ||||| ||| ||| || || || |||| Sbjct 1606 -CTTATTAGCGCGTCCGTCTTGCTCATATTTAGTATATAATTTTTCAAATTCATCGCCCC 1548 Query 63009 AAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCT 63068 | || | | || || ||||| | | |||||||| | |||||| ||| | | | | | Sbjct 1547 ATACCTCATGCAAGCCGGGACACTTGTGTGGACACATAAGCGACCAATCTTCATTAGCTT 1488 Query 63069 TCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTAT 63128 || ||||||||||| ||||| |||||||| | || ||||| |||||| | ||||| Sbjct 1487 CAACACGTTTCATAAAAAGATCTGGAATCCATAATGCATAAAATAAATCTCTAGCTCTAT 1428 Query 63129 GTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 63188 | || || | || ||||| || || | ||| | || | | ||||| | |||||| | Sbjct 1427 GCTCTTCTGTGCCAGTATTTTTCTTTAAATCCAAAAATTCAAATATATCTGCATGCCATG 1368 Query 63189 GTTC 63192 |||| Sbjct 1367 GTTC 1364 Score = 138 bits (152), Expect = 1e-27 Identities = 260/380 (68%), Gaps = 3/380 (1%) Strand=Plus/Minus Query 61925 TAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGAT 61984 |||||||| ||| || || ||| |||| | || || |||| ||| ||||| | ||| Sbjct 2681 TAAAAATGTATAGATGTAAGCTTGCCATAATTTGGTTCAGCTACATGAATATTAAACGAT 2622 Query 61985 TGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGA 62044 ||||||||||||||||| || || | || || ||||| || || | ||||| | Sbjct 2621 TGACTTTGATCGATGAATGCGCCACGATCGGCTGCCATCTTCATTGTAGTCTTCACCGAT 2562 Query 62045 ATTTCCCAAATAGTTTTATAAACT-CGCTTAATATCTTCTGGAAGGTTTGTATTC--TGA 62101 || ||||||| ||||| |||| | | | || | | | | | || || || | || Sbjct 2561 ATCTCCCAAACTGTTTTGTAAAGTTCACGTATTTTTGTTGGTATGGATTCAATACCTTGT 2502 Query 62102 ATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCG 62161 || || |||| || ||||| || || || || |||| ||| || || Sbjct 2501 ATTGAACCACGGCTTGTTATAATTTTAGATTTCATATCTTCATCCCACAAACCCAATTCA 2442 Query 62162 GTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGA 62221 || | | | | | | ||| ||||||| ||||||||||| || || | ||| | ||| Sbjct 2441 GTGAGATCGCGTAACAAATGATGATTAACAACTTGAAATTCACCCGAAAGTACGCGTCGA 2382 Query 62222 GTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTT 62281 | |||||||| || || ||||| | || |||||||| |||| |||||| |||||| Sbjct 2381 TTATAAATATTTGAAGTGTAGGGTTCAAACGATTCATTATTGCCCATAATTTGTGCAGTT 2322 Query 62282 GATGCAGTCGGCATAGGTGC 62301 |||||||| |||||||| || Sbjct 2321 GATGCAGTGGGCATAGGGGC 2302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632530700061600