Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq119770 140 3e-28 seq123102 134 1e-26 seq88566 132 4e-26 seq138766 84.2 2e-11 >seq119770 Length=1537 Score = 140 bits (154), Expect = 3e-28 Identities = 157/208 (75%), Gaps = 8/208 (4%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || || || | || || || ||||||| | || |||||| | || Sbjct 1093 AATGCAAATTTTCGTCAAAACACTAACTGGCAAGACCATCACCTTAGAGGTGGAGCCATC 1034 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 |||||| || || |||| |||| || | ||| || |||||||| |||||||| | Sbjct 1033 TGACACCATTGAAAATGTCA---AAGCTAAGATTCAG-GATAAAGAAGGTATTCCACCAG 978 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | ||||| || ||||||| ||||| |||||||||||||||| || ||| | ||| | Sbjct 977 ATCAACAACGTCTTATTTTCGCCGGAAAACAATTAGAAGATGGACGTACTCTATCCGACT 918 Query 25174 ACAATATTCAAAAAGAATCCACGCTACA 25201 ||||||||||||||||||| || || || Sbjct 917 ACAATATTCAAAAAGAATCAACACTTCA 890 >seq123102 Length=1410 Score = 134 bits (148), Expect = 1e-26 Identities = 159/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| || || ||||| || ||| | |||||| | ||||| || | || Sbjct 816 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACTATCACATTGGAAGTTGAACCTTCG 757 Query 25059 GACACTATCGAG-TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || |||||| | | ||||||||| ||| || || ||||| ||||| || ||||| Sbjct 756 GATACCATCGAGAACGTTAAAGCAAAAATTCA-AGATAAGGAAGGCATTCCCCCAGACCA 698 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | ||||| |||||||| || | || |||| ||||| | ||||||||| Sbjct 697 ACAACGTTTAATTTTCGCCGGCAAGCAGCTTGAGGATGGACGCACATTATCCGATTACAA 638 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| ||||| || || || || || || Sbjct 637 CATTCAAAAGGAATCAACACTTCACTTGGTTCT 605 >seq88566 Length=1870 Score = 132 bits (146), Expect = 4e-26 Identities = 170/232 (73%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||||||||| || || || | || |||||| |||||||| | || || || | || Sbjct 457 AATGCAAATATTCGTTAAAACCCTTACGGGTAAAACCATCACACTTGAGGTTGAACCTTC 398 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 || ||||| || |||| |||| || | ||| || || ||||| |||||||| | Sbjct 397 CGATACTATTGAACATGTCA---AAGCCAAGATTCA-AGATAAGGAAGGAATTCCACCAG 342 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | || || || | |||||||| |||||||| | ||||| | || ||| |||| |||| Sbjct 341 ATCAGCAACGTTTAATTTTTGCTGGCAAACAGCTGGAAGACGGACGAACTTTGGGTGATT 282 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | || |||||||| ||||| ||| | |||||||| | | || |||||||| Sbjct 281 ATAACATTCAAAAGGAATCTACGTTGCATTTAGTATTGCGTCTCAGAGGAGG 230 >seq138766 Length=1258 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || ||||| || | || || ||| | || ||| | || |||||| | || Sbjct 639 AATGCAAATCTTCGTAAAAACACTAACGGGAAAAACAATAACACTGGAGGTGGAGCCATC 698 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || | | | ||| | ||| ||||| || ||||| ||||||||||| || || Sbjct 699 CGAAAATGTTGAGAATGTCAAGGCCAAAATACAGGATAAAGAGGGGATTCCACCAGATCA 758 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || ||||| || || || | || |||| | || | ||||||||| Sbjct 759 GCAGAGACTGATCTTTGCTGGTAAGCAGCTTGAGGATGGAAGAACACTTTCCGATTACAA 818 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAA 25228 ||| || ||||| || || | ||| | || || ||||| | ||||| || Sbjct 819 TATACAGAAAGAGTCTACAATCCATCTTGTTCTGAGGCTTCGTGGAGGTAA 869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432593672350490