Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq123102 163 2e-35 seq88566 145 6e-30 seq119770 143 2e-29 seq21876 123 2e-23 seq138766 105 6e-18 >seq123102 Length=1410 Score = 163 bits (180), Expect = 2e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||||||||| || || || ||||| |||| | ||||| ||| | | Sbjct 816 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACTATCACATTGGAAGTTGAACCTTCG 757 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | ||| |||||||||||| ||||| || ||||| || || ||| Sbjct 756 GATACCATCGAGAACGTTAAAGCAAAAATTCAAGATAAGGAAGGCATTCCCCCAGACCAA 697 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || |||||||| ||| | |||||| ||||| | |||||||||||| Sbjct 696 CAACGTTTAATTTTCGCCGGCAAGCAGCTTGAGGATGGACGCACATTATCCGATTACAAC 637 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| ||||| || | || || ||| |||| |||| || ||| Sbjct 636 ATTCAAAAGGAATCAACACTTCACTTGGTTCTGCGTCTGCGGGGTGGT 589 Score = 131 bits (144), Expect = 1e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 22240 TTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAA 22299 || || || ||||| ||||| | || || || | | |||||| | || || | ||| Sbjct 1023 TTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCTGATACCATTGAAAATGTTAAA 964 Query 22300 CAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGC 22359 ||||||||||| || || || || ||||| |||||||||||| | || || || ||| Sbjct 963 GCTAAAATTCAAGATAAAGAAGGAATCCCACCAGATCAACAACGTTTGATTTTCGCTGGC 904 Query 22360 AAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATA 22419 ||||||||||||||| ||||| | |||||||| || ||||| || ||||| || | Sbjct 903 AAACAGTTAGAGGATGGACGCACATTGTCCGATTATAATATTCAGAAGGAATCTACATTG 844 Query 22420 CATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| || || | || |||||| Sbjct 843 CATTTAGTATTACGCCTTCGTGGAGGT 817 >seq88566 Length=1870 Score = 145 bits (160), Expect = 6e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || |||||||| | || |||||||| |||| ||||| || ||| | || Sbjct 456 ATGCAAATATTCGTTAAAACCCTTACGGGTAAAACCATCACACTTGAGGTTGAACCTTCC 397 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || ||||| || |||||||| ||||| || |||||||| ||||| Sbjct 396 GATACTATTGAACATGTCAAAGCCAAGATTCAAGATAAGGAAGGAATTCCACCAGATCAG 337 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| ||||||||| | || || || || | ||||| ||| Sbjct 336 CAACGTTTAATTTTTGCTGGCAAACAGCTGGAAGACGGACGAACTTTGGGTGATTATAAC 277 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 |||||||| ||||| || | |||||||| ||||| Sbjct 276 ATTCAAAAGGAATCTACGTTGCATTTAGTATTGCG 242 >seq119770 Length=1537 Score = 143 bits (158), Expect = 2e-29 Identities = 172/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||||||||| || ||||| |||| || || || |||| | || ||||| | Sbjct 1095 AAAATGCAAATTTTCGTCAAAACACTAACTGGCAAGACCATCACCTTAGAGGTGGAGCCA 1036 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || || ||||| || ||||| || || || ||||||||||| ||| Sbjct 1035 TCTGACACCATTGAAAATGTCAAAGCTAAGATTCAGGATAAAGAAGGTATTCCACCAGAT 976 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 |||||||||||||| || ||||| ||||| ||||| ||| || || | ||||| ||| Sbjct 975 CAACAACGTCTTATTTTCGCCGGAAAACAATTAGAAGATGGACGTACTCTATCCGACTAC 916 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 || |||||||||||||| || | || | || ||||| | || || ||| || Sbjct 915 AATATTCAAAAAGAATCAACACTTCACCTGGTATTGCGTCTACGTGGTGGTATT 862 >seq21876 Length=2391 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || |||||||| || || || || |||| || ||||| || | | Sbjct 512 ATGCAAATCTTCGTAAAAACTTTGACTGGCAAGACTATCACCCTGGAAGTTGAGCCGTCT 571 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || ||||||||||| ||||| || ||||| Sbjct 572 GACACCATCGAAAACGTTAAGGCTAAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAG 631 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || |||||||| || || || ||| ||| ||| | |||||||||||| Sbjct 632 CAGCGTTTAATCTTCGCCGGCAAGCAATTGGAAGATGGCCGTACCTTGTCCGATTACAAC 691 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || ||||| || | ||||| || |||| | || || ||| Sbjct 692 ATTCAGAAGGAATCAACGCTTCATTTGGTCCTGCGTCTACGTGGTGGT 739 Score = 100 bits (110), Expect = 2e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || |||||||| || || ||||| ||||| | ||||| || | || Sbjct 740 ATGCAAATCTTCGTAAAAACTTTGACAGGGAAAACTATCACTTTAGAAGTCGAGCCATCC 799 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | ||||| || ||||| |||||||| |||||||| || |||||| Sbjct 800 GACACTATTGAGAACGTCAAAGCTAAGATTCAGGACAAGGAAGGTATTCCTCCAGATCAA 859 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGA 22373 |||||| | || || || ||||| || | ||||| Sbjct 860 CAACGTTTAATCTTCGCTGGCAAGCAACTGGAGGA 894 >seq138766 Length=1258 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || ||||| |||| || ||||| | || || || ||||| | || Sbjct 640 ATGCAAATCTTCGTAAAAACACTAACGGGAAAAACAATAACACTGGAGGTGGAGCCATCC 699 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | || || || |||| ||||| || || || ||||| |||||||| ||||| Sbjct 700 GAAAATGTTGAGAATGTCAAGGCCAAAATACAGGATAAAGAGGGGATTCCACCAGATCAG 759 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| || || ||| | |||||| | || | ||||||||||| Sbjct 760 CAGAGACTGATCTTTGCTGGTAAGCAGCTTGAGGATGGAAGAACACTTTCCGATTACAAT 819 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||| || || || ||| | ||| || | | || |||||| Sbjct 820 ATACAGAAAGAGTCTACAATCCATCTTGTTCTGAGGCTTCGTGGAGGT 867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419016719224990