Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq123102 176 8e-39 seq119770 174 3e-38 seq21876 140 6e-28 seq88566 136 7e-27 seq138766 129 1e-24 >seq123102 Length=1410 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||||||| || || || || ||||| ||||| |||||||| Sbjct 590 CCACCCCGCAGACGCAGAACCAAGTGAAGTGTTGATTCCTTTTGAATGTTGTAATCGGAT 649 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | ||| | ||||| || | |||||| |||||||| || | | ||||||||| || ||| Sbjct 650 AATGTGCGTCCATCCTCAAGCTGCTTGCCGGCGAAAATTAAACGTTGTTGGTCTGGGGGA 709 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||| |||||||| ||||| || ||| ||||||||| || | | ||| ||| Sbjct 710 ATGCCTTCCTTATCTTGAATTTTTGCTTTAACGTTCTCGATGGTATCCGAAGGTTCAACT 769 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| ||||| || || | || || || ||||| ||||| Sbjct 770 TCCAATGTGATAGTTTTGCCAGTCAATGTTTTAACAAATATTTGCAT 816 Score = 136 bits (150), Expect = 7e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| |||||||| ||||| || || | || || || || || || ||||||||||| Sbjct 818 CCTCCACGAAGGCGTAATACTAAATGCAATGTAGATTCCTTCTGAATATTATAATCGGAC 877 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | ||| | ||||| |||||||| || || ||||| || | | |||||| || ||||| Sbjct 878 AATGTGCGTCCATCCTCTAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGG 937 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| || |||||||| || || || || || ||||| || | | || || Sbjct 938 ATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATGGTATCAGAAGGCTCAACC 997 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 ||||| ||||||||||||||||| Sbjct 998 TCCAAAGTGATGGTTTTTCCCGT 1020 >seq119770 Length=1537 Score = 174 bits (192), Expect = 3e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||||||||| ||| || || || |||||||| || || || ||||| Sbjct 866 CCACCACGTAGACGCAATACCAGGTGAAGTGTTGATTCTTTTTGAATATTGTAGTCGGAT 925 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||||||||| || || |||||||| || || | |||||| || |||||| Sbjct 926 AGAGTACGTCCATCTTCTAATTGTTTTCCGGCGAAAATAAGACGTTGTTGATCTGGTGGA 985 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| || || |||||||| || ||||| || |||||||| | || || || Sbjct 986 ATACCTTCTTTATCCTGAATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGCTCCACC 1045 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || ||||||||||| || || || || || |||||||| || |||||| || Sbjct 1046 TCTAAGGTGATGGTCTTGCCAGTTAGTGTTTTGACGAAAATTTGCATTTTG 1096 >seq21876 Length=2391 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| ||||| || ||||| || || || || ||||| |||||||| Sbjct 738 CCACCACGTAGACGCAGGACCAAATGAAGCGTTGATTCCTTCTGAATGTTGTAATCGGAC 679 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| || ||||| |||||||| || | | || || || || ||| Sbjct 678 AAGGTACGGCCATCTTCCAATTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGGGGA 619 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||||| ||| ||||||||||| | | || ||| Sbjct 618 ATTCCCTCCTTGTCCTGGATCTTAGCCTTAACGTTTTCGATGGTGTCAGACGGCTCAACT 559 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| |||||| || || || || | || || ||||| || ||||| Sbjct 558 TCCAGGGTGATAGTCTTGCCAGTCAAAGTTTTTACGAAGATTTGCAT 512 Score = 107 bits (118), Expect = 4e-18 Identities = 127/172 (74%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 68290 CGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGG 68349 |||| | |||| || || || | ||||| || ||||| || | | |||||| || | Sbjct 911 CGGACAAAGTCCGTCCGTCCTCCAGTTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTG 852 Query 68350 GTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATT 68409 | ||||| ||||||||||| |||||||| || |||||| ||| || ||||| | || | Sbjct 851 GAGGAATACCTTCCTTGTCCTGAATCTTAGCTTTGACGTTCTCAATAGTGTCGGATGGCT 792 Query 68410 CTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||| || ||||| ||||| || || | || || ||||| || ||||| Sbjct 791 CGACTTCTAAAGTGATAGTTTTCCCTGTCAAAGTTTTTACGAAGATTTGCAT 740 Score = 93.3 bits (102), Expect = 8e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 68343 TGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCT 68402 || || || ||||| || |||||||| || ||||| ||||| ||| |||||| || || Sbjct 136 TGATCTGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTAACGTTCTCGATAGTATCG 77 Query 68403 GCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || || || |||||||||||||| || || || | ||||| ||||| |||||||| Sbjct 76 GATGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAATGTCTTAACGAAGATCTGCAT 18 >seq88566 Length=1870 Score = 136 bits (150), Expect = 7e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || |||||||| || || | ||| || || ||||| ||||||||||| Sbjct 230 CCTCCTCTGAGACGCAATACTAAATGCAACGTAGATTCCTTTTGAATGTTATAATCACCC 289 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || ||||| | ||| || || || || || | | ||| || || |||||| Sbjct 290 AAAGTTCGTCCGTCTTCCAGCTGTTTGCCAGCAAAAATTAAACGTTGCTGATCTGGTGGA 349 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| ||||||||||| || ||||| || || || || | | ||| || Sbjct 350 ATTCCTTCCTTATCTTGAATCTTGGCTTTGACATGTTCAATAGTATCGGAAGGTTCAACC 409 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | ||||||||||| ||||| ||||| || |||||||| |||||| Sbjct 410 TCAAGTGTGATGGTTTTACCCGTAAGGGTTTTAACGAATATTTGCATT 457 >seq138766 Length=1258 Score = 129 bits (142), Expect = 1e-24 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 68232 TTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCG 68291 || ||||| ||||| | || || | || | || |||||||| || || || |||||| Sbjct 869 TTACCTCCACGAAGCCTCAGAACAAGATGGATTGTAGACTCTTTCTGTATATTGTAATCG 810 Query 68292 GAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGT 68351 || ||||| || ||||| || | |||||| || || || || ||||| || || || ||| Sbjct 809 GAAAGTGTTCTTCCATCCTCAAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCTGGT 750 Query 68352 GGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCT 68411 ||||| || || || || || || || |||||||| ||| | | || | || || Sbjct 749 GGAATCCCCTCTTTATCCTGTATTTTGGCCTTGACATTCTCAACATTTTCGGATGGCTCC 690 Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || |||| || || ||||||||||| || || || ||||| || |||||| Sbjct 689 ACCTCCAGTGTTATTGTTTTTCCCGTTAGTGTTTTTACGAAGATTTGCATT 639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920020551147120