Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq119770 104 2e-17 seq138766 98.7 7e-16 seq123102 86.0 4e-12 >seq119770 Length=1537 Score = 104 bits (114), Expect = 2e-17 Identities = 166/237 (70%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 |||||||||||| || | |||||| |||| ||||| ||||| ||| | || ||| | Sbjct 1096 CAAAATGCAAATTTTCGTCAAAACACTAACTGGCAAGACCATCACCTTAGAGGTGGAGCC 1037 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | || || | | || | || || ||| |||||||| ||| | || | | Sbjct 1036 ATCTGACACCATTGAAAATGTCAAAGCTAAGATTCAGGATAAAGAAGGTATTCCACCAGA 977 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 ||||| | ||||| || || || |||||| |||||||| | ||| | |||| || Sbjct 976 TCAACAACGTCTTATTTTCGCCGGAAAACAATTAGAAGATGGACGTACTCTATCCGACTA 917 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTA 22066 ||||||||| || ||||| || ||||| ||||||| ||| |||| || || ||||| Sbjct 916 CAATATTCAAAAAGAATCAACACTTCACCTGGTATTGCGTCTACGTGGTGG-TATTA 861 >seq138766 Length=1258 Score = 98.7 bits (108), Expect = 7e-16 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 21832 AAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCG 21891 |||||||||| || | |||||| ||||||| ||||| || || |||| ||| | Sbjct 638 AAATGCAAATCTTCGTAAAAACACTAACGGGAAAAACAATAACACTGGAGGTGGAGCCAT 697 Query 21892 CAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACC 21951 | |||| || | || | ||| ||||| ||||||||||| | || | | | Sbjct 698 CCGAAAATGTTGAGAATGTCAAGGCCAAAATACAGGATAAAGAGGGGATTCCACCAGATC 757 Query 21952 AACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACA 22011 | |||||||| ||||||||||| || || || || ||| || ||| | ||||||||| Sbjct 758 AGCAGAGACTGATCTTTGCTGGTAAGCAGCTTGAGGATGGAAGAACACTTTCCGATTACA 817 Query 22012 ATATTCAGAAGGAATCTAC 22030 |||| ||||| || ||||| Sbjct 818 ATATACAGAAAGAGTCTAC 836 >seq123102 Length=1410 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||||||| |||||||||| || |||||||| || || ||||| ||| | | Sbjct 816 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACTATCACATTGGAAGTTGAACCTTCG 757 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | |||| ||||||| ||||| || || | || | ||||| Sbjct 756 GATACCATCGAGAACGTTAAAGCAAAAATTCAAGATAAGGAAGGCATTCCCCCAGACCAA 697 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || | | || || || ||||| || || || ||| | || | |||||||||| Sbjct 696 CAACGTTTAATTTTCGCCGGCAAGCAGCTTGAGGATGGACGCACATTATCCGATTACAAC 637 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| |||||||| || ||||| |||| | ||| | || || || Sbjct 636 ATTCAAAAGGAATCAACACTTCACTTGGTTCTGCGTCTGCGGGGTGG 590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357517913432284